Hb_007416_220

Information

Type -
Description -
Location Contig7416: 134629-134994
Sequence    

Annotation

kegg
ID rcu:RCOM_0918640
description hypothetical protein
nr
ID XP_012076343.1
description PREDICTED: uncharacterized protein LOC105637482 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KMD1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07021 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007416_220 0.0 - - PREDICTED: uncharacterized protein LOC105637482 [Jatropha curcas]
2 Hb_000085_200 0.121965999 - - ATP synthase subunit H protein [Hevea brasiliensis]
3 Hb_000922_170 0.1304117555 - - PREDICTED: uncharacterized protein LOC105640383 [Jatropha curcas]
4 Hb_004958_050 0.1360623643 - - hypothetical protein CICLE_v10032980mg [Citrus clementina]
5 Hb_000188_130 0.1369340024 - - PREDICTED: uncharacterized protein LOC102628744 [Citrus sinensis]
6 Hb_000144_110 0.1381248416 - - hypothetical protein CICLE_v10013189mg [Citrus clementina]
7 Hb_000046_260 0.1414234892 - - acyl carrier protein, putative [Ricinus communis]
8 Hb_011609_180 0.1431023073 - - PREDICTED: uncharacterized protein DDB_G0275933-like [Citrus sinensis]
9 Hb_000641_040 0.1448039847 - - PREDICTED: condensin complex subunit 1 isoform X1 [Jatropha curcas]
10 Hb_001341_130 0.1451450853 - - conserved hypothetical protein [Ricinus communis]
11 Hb_004116_080 0.1458949421 - - ATATH9, putative [Ricinus communis]
12 Hb_000025_290 0.1501569085 - - Uncharacterized protein TCM_031320 [Theobroma cacao]
13 Hb_002759_230 0.150202235 - - PREDICTED: vacuolar protein sorting-associated protein 25 [Jatropha curcas]
14 Hb_000963_030 0.1503881728 - - PREDICTED: uncharacterized protein LOC105628095 [Jatropha curcas]
15 Hb_011689_050 0.1515190249 - - hypothetical protein POPTR_0008s20290g [Populus trichocarpa]
16 Hb_001045_080 0.1528125779 - - PREDICTED: uncharacterized protein LOC105646704 [Jatropha curcas]
17 Hb_000526_020 0.1543620466 - - thioredoxin-like family protein [Hevea brasiliensis]
18 Hb_001153_080 0.1557090018 transcription factor TF Family: MIKC PREDICTED: agamous-like MADS-box protein AGL19 [Jatropha curcas]
19 Hb_092706_020 0.1557836505 - - PREDICTED: uncharacterized protein LOC105637876 isoform X1 [Jatropha curcas]
20 Hb_000161_050 0.1561001353 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_007416_220 Hb_007416_220 Hb_000085_200 Hb_000085_200 Hb_007416_220--Hb_000085_200 Hb_000922_170 Hb_000922_170 Hb_007416_220--Hb_000922_170 Hb_004958_050 Hb_004958_050 Hb_007416_220--Hb_004958_050 Hb_000188_130 Hb_000188_130 Hb_007416_220--Hb_000188_130 Hb_000144_110 Hb_000144_110 Hb_007416_220--Hb_000144_110 Hb_000046_260 Hb_000046_260 Hb_007416_220--Hb_000046_260 Hb_011609_180 Hb_011609_180 Hb_000085_200--Hb_011609_180 Hb_000634_050 Hb_000634_050 Hb_000085_200--Hb_000634_050 Hb_002447_030 Hb_002447_030 Hb_000085_200--Hb_002447_030 Hb_002529_100 Hb_002529_100 Hb_000085_200--Hb_002529_100 Hb_000008_320 Hb_000008_320 Hb_000085_200--Hb_000008_320 Hb_000417_110 Hb_000417_110 Hb_000085_200--Hb_000417_110 Hb_000922_170--Hb_000046_260 Hb_000922_170--Hb_000188_130 Hb_001045_080 Hb_001045_080 Hb_000922_170--Hb_001045_080 Hb_004116_080 Hb_004116_080 Hb_000922_170--Hb_004116_080 Hb_000161_050 Hb_000161_050 Hb_000922_170--Hb_000161_050 Hb_007140_020 Hb_007140_020 Hb_000922_170--Hb_007140_020 Hb_002234_210 Hb_002234_210 Hb_004958_050--Hb_002234_210 Hb_011689_050 Hb_011689_050 Hb_004958_050--Hb_011689_050 Hb_001616_020 Hb_001616_020 Hb_004958_050--Hb_001616_020 Hb_004958_050--Hb_000634_050 Hb_000526_150 Hb_000526_150 Hb_004958_050--Hb_000526_150 Hb_003638_080 Hb_003638_080 Hb_004958_050--Hb_003638_080 Hb_001341_130 Hb_001341_130 Hb_000188_130--Hb_001341_130 Hb_000045_190 Hb_000045_190 Hb_000188_130--Hb_000045_190 Hb_002759_230 Hb_002759_230 Hb_000188_130--Hb_002759_230 Hb_001153_080 Hb_001153_080 Hb_000188_130--Hb_001153_080 Hb_000188_130--Hb_001045_080 Hb_000188_130--Hb_002529_100 Hb_000815_270 Hb_000815_270 Hb_000144_110--Hb_000815_270 Hb_000144_110--Hb_011609_180 Hb_000144_110--Hb_001045_080 Hb_009851_100 Hb_009851_100 Hb_000144_110--Hb_009851_100 Hb_000025_600 Hb_000025_600 Hb_000144_110--Hb_000025_600 Hb_009252_130 Hb_009252_130 Hb_000144_110--Hb_009252_130 Hb_000046_260--Hb_001045_080 Hb_000046_260--Hb_004116_080 Hb_000312_090 Hb_000312_090 Hb_000046_260--Hb_000312_090 Hb_000046_260--Hb_000045_190 Hb_001687_040 Hb_001687_040 Hb_000046_260--Hb_001687_040 Hb_002214_050 Hb_002214_050 Hb_000046_260--Hb_002214_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.49702 0.64789 1.21919 1.93811 2.32859 2.20124
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.80104 11.7739 3.77304 0.817514 0

CAGE analysis