Hb_005298_050

Information

Type -
Description -
Location Contig5298: 60178-62289
Sequence    

Annotation

kegg
ID csv:101203928
description uncharacterized LOC101203928
nr
ID AAV85747.1
description Integrase core domain, putative [Oryza sativa Japonica Group]
swissprot
ID P10978
description Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1
trembl
ID Q5R1J2
description Integrase core domain, putative OS=Oryza sativa subsp. japonica GN=LOC_Os11g18580 PE=4 SV=1
Gene Ontology
ID GO:0005488
description retrotransposon ty1-copia subclass

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005298_050 0.0 - - Integrase core domain, putative [Oryza sativa Japonica Group]
2 Hb_005298_040 0.24196484 - - hypothetical protein CICLE_v10003181mg, partial [Citrus clementina]
3 Hb_000139_330 0.3132330374 - - short chain dehydrogenase, putative [Ricinus communis]
4 Hb_003304_050 0.3342278581 - - PREDICTED: uncharacterized protein LOC105633679 isoform X1 [Jatropha curcas]
5 Hb_113739_010 0.3347862287 - - hypothetical protein JCGZ_06379 [Jatropha curcas]
6 Hb_007792_010 0.3362920718 - - PREDICTED: uncharacterized protein LOC105775124 [Gossypium raimondii]
7 Hb_000705_300 0.3380651389 - - PREDICTED: probable protein phosphatase 2C 24 [Jatropha curcas]
8 Hb_000538_150 0.3415955454 - - PREDICTED: 7-deoxyloganetin glucosyltransferase-like [Jatropha curcas]
9 Hb_005892_060 0.3488090024 - - PREDICTED: uncharacterized protein LOC105632176 isoform X2 [Jatropha curcas]
10 Hb_002175_040 0.3500798113 - - PREDICTED: myb family transcription factor APL-like [Jatropha curcas]
11 Hb_000032_240 0.3572483767 - - conserved hypothetical protein [Ricinus communis]
12 Hb_074197_010 0.358729522 - - PREDICTED: methylsterol monooxygenase 1-1-like [Jatropha curcas]
13 Hb_000373_290 0.3609921585 - - RecName: Full=Citrate-binding protein; Flags: Precursor [Hevea brasiliensis]
14 Hb_022212_010 0.3627023775 - - -
15 Hb_127743_020 0.3630355395 transcription factor TF Family: MYB PREDICTED: myb-related protein 308 isoform X2 [Jatropha curcas]
16 Hb_173902_040 0.363429666 - - -
17 Hb_000445_330 0.3648242253 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000548_030 0.3658151278 rubber biosynthesis Gene Name: CPT5 PREDICTED: dehydrodolichyl diphosphate synthase 6-like [Beta vulgaris subsp. vulgaris]
19 Hb_001828_010 0.3669336108 - - -
20 Hb_024399_030 0.3676930341 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_005298_050 Hb_005298_050 Hb_005298_040 Hb_005298_040 Hb_005298_050--Hb_005298_040 Hb_000139_330 Hb_000139_330 Hb_005298_050--Hb_000139_330 Hb_003304_050 Hb_003304_050 Hb_005298_050--Hb_003304_050 Hb_113739_010 Hb_113739_010 Hb_005298_050--Hb_113739_010 Hb_007792_010 Hb_007792_010 Hb_005298_050--Hb_007792_010 Hb_000705_300 Hb_000705_300 Hb_005298_050--Hb_000705_300 Hb_005298_040--Hb_000139_330 Hb_005298_040--Hb_000705_300 Hb_024399_030 Hb_024399_030 Hb_005298_040--Hb_024399_030 Hb_005298_040--Hb_113739_010 Hb_000538_150 Hb_000538_150 Hb_005298_040--Hb_000538_150 Hb_004032_440 Hb_004032_440 Hb_000139_330--Hb_004032_440 Hb_006501_110 Hb_006501_110 Hb_000139_330--Hb_006501_110 Hb_002876_030 Hb_002876_030 Hb_000139_330--Hb_002876_030 Hb_000548_030 Hb_000548_030 Hb_000139_330--Hb_000548_030 Hb_023988_020 Hb_023988_020 Hb_000139_330--Hb_023988_020 Hb_002603_130 Hb_002603_130 Hb_000139_330--Hb_002603_130 Hb_003687_200 Hb_003687_200 Hb_003304_050--Hb_003687_200 Hb_000641_030 Hb_000641_030 Hb_003304_050--Hb_000641_030 Hb_003304_050--Hb_000548_030 Hb_026447_030 Hb_026447_030 Hb_003304_050--Hb_026447_030 Hb_003654_010 Hb_003654_010 Hb_003304_050--Hb_003654_010 Hb_002027_220 Hb_002027_220 Hb_003304_050--Hb_002027_220 Hb_000137_070 Hb_000137_070 Hb_113739_010--Hb_000137_070 Hb_182516_010 Hb_182516_010 Hb_113739_010--Hb_182516_010 Hb_000390_200 Hb_000390_200 Hb_113739_010--Hb_000390_200 Hb_068804_150 Hb_068804_150 Hb_113739_010--Hb_068804_150 Hb_113739_010--Hb_000139_330 Hb_113739_010--Hb_002603_130 Hb_001741_050 Hb_001741_050 Hb_007792_010--Hb_001741_050 Hb_153231_040 Hb_153231_040 Hb_007792_010--Hb_153231_040 Hb_002231_050 Hb_002231_050 Hb_007792_010--Hb_002231_050 Hb_002307_130 Hb_002307_130 Hb_007792_010--Hb_002307_130 Hb_005496_060 Hb_005496_060 Hb_007792_010--Hb_005496_060 Hb_001195_590 Hb_001195_590 Hb_007792_010--Hb_001195_590 Hb_000331_290 Hb_000331_290 Hb_000705_300--Hb_000331_290 Hb_000705_300--Hb_006501_110 Hb_000705_300--Hb_000390_200 Hb_006096_040 Hb_006096_040 Hb_000705_300--Hb_006096_040 Hb_003371_180 Hb_003371_180 Hb_000705_300--Hb_003371_180 Hb_000705_300--Hb_000139_330
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0490702 0 0.0171913 0.0180498 0.0231763 0.011324
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0789606 0 0 0 0

CAGE analysis