Hb_000705_300

Information

Type -
Description -
Location Contig705: 169011-171266
Sequence    

Annotation

kegg
ID tcc:TCM_041761
description Highly ABA-induced PP2C gene 2 isoform 1
nr
ID XP_012066955.1
description PREDICTED: probable protein phosphatase 2C 24 [Jatropha curcas]
swissprot
ID Q9LNW3
description Protein phosphatase 2C 3 OS=Arabidopsis thaliana GN=AIP1 PE=1 SV=1
trembl
ID A0A067LDT9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02934 PE=3 SV=1
Gene Ontology
ID GO:0004722
description probable protein phosphatase 2c 24

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55091: 169067-171257
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000705_300 0.0 - - PREDICTED: probable protein phosphatase 2C 24 [Jatropha curcas]
2 Hb_000331_290 0.1589346673 - - conserved hypothetical protein [Ricinus communis]
3 Hb_006501_110 0.1823775844 - - PREDICTED: probable 2-oxoglutarate-dependent dioxygenase At3g49630 isoform X1 [Jatropha curcas]
4 Hb_000390_200 0.184328218 - - PREDICTED: uncharacterized protein LOC105632462 [Jatropha curcas]
5 Hb_006096_040 0.1856731292 - - PREDICTED: COP9 signalosome complex subunit 8 [Jatropha curcas]
6 Hb_003371_180 0.1872201688 - - -
7 Hb_000139_330 0.1885084757 - - short chain dehydrogenase, putative [Ricinus communis]
8 Hb_002301_290 0.1900538299 transcription factor TF Family: SBP Squamosa promoter-binding protein, putative [Ricinus communis]
9 Hb_000179_170 0.1903669598 - - PREDICTED: protein bem46 isoform X1 [Jatropha curcas]
10 Hb_068804_150 0.1905024337 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000041_080 0.1964317347 - - PREDICTED: universal stress protein A-like protein [Jatropha curcas]
12 Hb_004242_060 0.1992411972 - - PREDICTED: nicotinamidase 2-like [Jatropha curcas]
13 Hb_003376_100 0.2017542392 - - PREDICTED: uncharacterized protein LOC105642192 [Jatropha curcas]
14 Hb_005271_170 0.2025119831 - - PREDICTED: tetraspanin-10 isoform X3 [Vitis vinifera]
15 Hb_002349_040 0.2025958977 - - PREDICTED: RNA pseudouridine synthase 5 [Jatropha curcas]
16 Hb_154623_010 0.2041209747 - - PREDICTED: probable 6-phosphogluconolactonase 4, chloroplastic [Jatropha curcas]
17 Hb_000264_240 0.2041751703 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000028_220 0.2058244743 - - PREDICTED: dnaJ protein homolog 2 [Jatropha curcas]
19 Hb_001623_240 0.2059828819 - - hypothetical protein VITISV_004933 [Vitis vinifera]
20 Hb_005892_060 0.2075902718 - - PREDICTED: uncharacterized protein LOC105632176 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000705_300 Hb_000705_300 Hb_000331_290 Hb_000331_290 Hb_000705_300--Hb_000331_290 Hb_006501_110 Hb_006501_110 Hb_000705_300--Hb_006501_110 Hb_000390_200 Hb_000390_200 Hb_000705_300--Hb_000390_200 Hb_006096_040 Hb_006096_040 Hb_000705_300--Hb_006096_040 Hb_003371_180 Hb_003371_180 Hb_000705_300--Hb_003371_180 Hb_000139_330 Hb_000139_330 Hb_000705_300--Hb_000139_330 Hb_002349_040 Hb_002349_040 Hb_000331_290--Hb_002349_040 Hb_000331_290--Hb_006096_040 Hb_006634_040 Hb_006634_040 Hb_000331_290--Hb_006634_040 Hb_001484_060 Hb_001484_060 Hb_000331_290--Hb_001484_060 Hb_001124_120 Hb_001124_120 Hb_000331_290--Hb_001124_120 Hb_007086_010 Hb_007086_010 Hb_000331_290--Hb_007086_010 Hb_000481_020 Hb_000481_020 Hb_006501_110--Hb_000481_020 Hb_004787_090 Hb_004787_090 Hb_006501_110--Hb_004787_090 Hb_000982_070 Hb_000982_070 Hb_006501_110--Hb_000982_070 Hb_006501_110--Hb_000390_200 Hb_004659_120 Hb_004659_120 Hb_006501_110--Hb_004659_120 Hb_000723_090 Hb_000723_090 Hb_006501_110--Hb_000723_090 Hb_000179_170 Hb_000179_170 Hb_000390_200--Hb_000179_170 Hb_001416_010 Hb_001416_010 Hb_000390_200--Hb_001416_010 Hb_004899_050 Hb_004899_050 Hb_000390_200--Hb_004899_050 Hb_002301_290 Hb_002301_290 Hb_000390_200--Hb_002301_290 Hb_011310_190 Hb_011310_190 Hb_000390_200--Hb_011310_190 Hb_004046_040 Hb_004046_040 Hb_006096_040--Hb_004046_040 Hb_000933_150 Hb_000933_150 Hb_006096_040--Hb_000933_150 Hb_000676_050 Hb_000676_050 Hb_006096_040--Hb_000676_050 Hb_002687_140 Hb_002687_140 Hb_006096_040--Hb_002687_140 Hb_000482_110 Hb_000482_110 Hb_006096_040--Hb_000482_110 Hb_019249_010 Hb_019249_010 Hb_003371_180--Hb_019249_010 Hb_000788_130 Hb_000788_130 Hb_003371_180--Hb_000788_130 Hb_181288_010 Hb_181288_010 Hb_003371_180--Hb_181288_010 Hb_000465_040 Hb_000465_040 Hb_003371_180--Hb_000465_040 Hb_010407_040 Hb_010407_040 Hb_003371_180--Hb_010407_040 Hb_013405_060 Hb_013405_060 Hb_003371_180--Hb_013405_060 Hb_004032_440 Hb_004032_440 Hb_000139_330--Hb_004032_440 Hb_000139_330--Hb_006501_110 Hb_002876_030 Hb_002876_030 Hb_000139_330--Hb_002876_030 Hb_000548_030 Hb_000548_030 Hb_000139_330--Hb_000548_030 Hb_023988_020 Hb_023988_020 Hb_000139_330--Hb_023988_020 Hb_002603_130 Hb_002603_130 Hb_000139_330--Hb_002603_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
29.5291 9.6058 13.0681 13.2962 33.7409 14.8135
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
66.8241 15.5902 6.61751 2.37584 5.27837

CAGE analysis