Hb_010504_010

Information

Type -
Description -
Location Contig10504: 48668-48997
Sequence    

Annotation

kegg
ID rcu:RCOM_0465830
description 30S ribosomal protein S8, putative
nr
ID ADR71250.1
description 40S ribosomal protein S15C [Hevea brasiliensis]
swissprot
ID P42798
description 40S ribosomal protein S15a-1 OS=Arabidopsis thaliana GN=RPS15AA PE=2 SV=2
trembl
ID I3NML3
description 40S ribosomal protein S15C OS=Hevea brasiliensis GN=RPS15C PE=2 SV=1
Gene Ontology
ID GO:0005840
description 40s ribosomal protein s15a-1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010504_010 0.0 - - 40S ribosomal protein S15C [Hevea brasiliensis]
2 Hb_002239_010 0.1190498744 - - -
3 Hb_153231_040 0.1204869667 - - -
4 Hb_022212_010 0.2589706618 - - -
5 Hb_002307_130 0.2846379551 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000350_110 0.3042671541 - - PREDICTED: uncharacterized protein LOC104220461 isoform X2 [Nicotiana sylvestris]
7 Hb_004304_050 0.3168360886 - - PREDICTED: uncharacterized protein LOC105634770 [Jatropha curcas]
8 Hb_005183_160 0.316864742 - - -
9 Hb_003918_040 0.3170037633 - - -
10 Hb_001863_060 0.3270644386 - - PIF-like transposase [Daucus carota]
11 Hb_007792_010 0.3312228881 - - PREDICTED: uncharacterized protein LOC105775124 [Gossypium raimondii]
12 Hb_008880_010 0.3392894059 - - PREDICTED: receptor-like serine/threonine-protein kinase SD1-8 isoform X2 [Nelumbo nucifera]
13 Hb_061390_010 0.3393331972 - - PREDICTED: uncharacterized protein LOC105638675 [Jatropha curcas]
14 Hb_000281_210 0.3397965537 - - -
15 Hb_115350_010 0.339857266 - - PREDICTED: uncharacterized protein LOC105796032 [Gossypium raimondii]
16 Hb_002779_020 0.3400115496 - - transcription factor, putative [Ricinus communis]
17 Hb_136696_010 0.340299368 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
18 Hb_068804_160 0.3448569954 transcription factor TF Family: MIKC hypothetical protein JCGZ_12632 [Jatropha curcas]
19 Hb_000088_060 0.3571844282 - - -
20 Hb_001265_010 0.37771838 transcription factor TF Family: NAC NAC transcription factor 057 [Jatropha curcas]

Gene co-expression network

sample Hb_010504_010 Hb_010504_010 Hb_002239_010 Hb_002239_010 Hb_010504_010--Hb_002239_010 Hb_153231_040 Hb_153231_040 Hb_010504_010--Hb_153231_040 Hb_022212_010 Hb_022212_010 Hb_010504_010--Hb_022212_010 Hb_002307_130 Hb_002307_130 Hb_010504_010--Hb_002307_130 Hb_000350_110 Hb_000350_110 Hb_010504_010--Hb_000350_110 Hb_004304_050 Hb_004304_050 Hb_010504_010--Hb_004304_050 Hb_002239_010--Hb_153231_040 Hb_000281_210 Hb_000281_210 Hb_002239_010--Hb_000281_210 Hb_002239_010--Hb_022212_010 Hb_000088_060 Hb_000088_060 Hb_002239_010--Hb_000088_060 Hb_002239_010--Hb_002307_130 Hb_153231_040--Hb_022212_010 Hb_153231_040--Hb_000350_110 Hb_001863_060 Hb_001863_060 Hb_153231_040--Hb_001863_060 Hb_007792_010 Hb_007792_010 Hb_153231_040--Hb_007792_010 Hb_076693_010 Hb_076693_010 Hb_022212_010--Hb_076693_010 Hb_011707_010 Hb_011707_010 Hb_022212_010--Hb_011707_010 Hb_092027_010 Hb_092027_010 Hb_022212_010--Hb_092027_010 Hb_008031_020 Hb_008031_020 Hb_022212_010--Hb_008031_020 Hb_001831_020 Hb_001831_020 Hb_022212_010--Hb_001831_020 Hb_002307_130--Hb_000350_110 Hb_040562_010 Hb_040562_010 Hb_002307_130--Hb_040562_010 Hb_003108_010 Hb_003108_010 Hb_002307_130--Hb_003108_010 Hb_002307_130--Hb_007792_010 Hb_000350_110--Hb_001863_060 Hb_000350_110--Hb_022212_010 Hb_148908_020 Hb_148908_020 Hb_000350_110--Hb_148908_020 Hb_005183_160 Hb_005183_160 Hb_004304_050--Hb_005183_160 Hb_003918_040 Hb_003918_040 Hb_004304_050--Hb_003918_040 Hb_008880_010 Hb_008880_010 Hb_004304_050--Hb_008880_010 Hb_061390_010 Hb_061390_010 Hb_004304_050--Hb_061390_010 Hb_115350_010 Hb_115350_010 Hb_004304_050--Hb_115350_010 Hb_002779_020 Hb_002779_020 Hb_004304_050--Hb_002779_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.124826 0 0 0 0.245376 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.297835 0 0 0 0

CAGE analysis