Hb_003108_010

Information

Type -
Description -
Location Contig3108: 432-1031
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003108_010 0.0 - - -
2 Hb_011179_040 0.2114984977 - - conserved hypothetical protein [Ricinus communis]
3 Hb_040562_010 0.2153572204 - - -
4 Hb_000548_010 0.230842373 - - -
5 Hb_003320_030 0.2684231928 - - conserved hypothetical protein [Ricinus communis]
6 Hb_156144_020 0.2697024104 - - PREDICTED: uncharacterized protein At5g65660 [Vitis vinifera]
7 Hb_002483_020 0.2707299352 - - -
8 Hb_001017_100 0.2723917666 - - PREDICTED: uncharacterized protein LOC105644705 [Jatropha curcas]
9 Hb_000123_390 0.2730240362 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001146_070 0.2842787046 transcription factor TF Family: bHLH LMYC2 [Hevea brasiliensis]
11 Hb_029866_010 0.2877191287 - - -
12 Hb_005116_020 0.2901412254 - - PREDICTED: DNA repair helicase UVH6 isoform X2 [Sesamum indicum]
13 Hb_000038_150 0.2921722031 - - PREDICTED: E3 ubiquitin-protein ligase RNF181 homolog [Jatropha curcas]
14 Hb_013983_010 0.2930656337 - - hypothetical protein PRUPE_ppa016763mg, partial [Prunus persica]
15 Hb_000739_290 0.2947017785 - - cytochrome P450, putative [Ricinus communis]
16 Hb_002983_100 0.2969918407 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF084 [Jatropha curcas]
17 Hb_001159_210 0.2979280822 - - PREDICTED: MATE efflux family protein DTX1 [Jatropha curcas]
18 Hb_000236_270 0.3006924792 - - ATP-binding cassette transporter, putative [Ricinus communis]
19 Hb_002307_130 0.3013794591 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000161_100 0.304239356 - - Transducin/WD40 repeat-like superfamily protein isoform 2 [Theobroma cacao]

Gene co-expression network

sample Hb_003108_010 Hb_003108_010 Hb_011179_040 Hb_011179_040 Hb_003108_010--Hb_011179_040 Hb_040562_010 Hb_040562_010 Hb_003108_010--Hb_040562_010 Hb_000548_010 Hb_000548_010 Hb_003108_010--Hb_000548_010 Hb_003320_030 Hb_003320_030 Hb_003108_010--Hb_003320_030 Hb_156144_020 Hb_156144_020 Hb_003108_010--Hb_156144_020 Hb_002483_020 Hb_002483_020 Hb_003108_010--Hb_002483_020 Hb_008887_010 Hb_008887_010 Hb_011179_040--Hb_008887_010 Hb_007218_090 Hb_007218_090 Hb_011179_040--Hb_007218_090 Hb_011179_040--Hb_040562_010 Hb_027998_030 Hb_027998_030 Hb_011179_040--Hb_027998_030 Hb_011179_040--Hb_156144_020 Hb_057655_010 Hb_057655_010 Hb_040562_010--Hb_057655_010 Hb_001811_060 Hb_001811_060 Hb_040562_010--Hb_001811_060 Hb_002307_130 Hb_002307_130 Hb_040562_010--Hb_002307_130 Hb_000340_480 Hb_000340_480 Hb_040562_010--Hb_000340_480 Hb_008147_030 Hb_008147_030 Hb_000548_010--Hb_008147_030 Hb_000548_010--Hb_003320_030 Hb_000548_010--Hb_156144_020 Hb_001146_070 Hb_001146_070 Hb_000548_010--Hb_001146_070 Hb_001268_230 Hb_001268_230 Hb_000548_010--Hb_001268_230 Hb_001017_100 Hb_001017_100 Hb_000548_010--Hb_001017_100 Hb_002983_100 Hb_002983_100 Hb_003320_030--Hb_002983_100 Hb_001329_260 Hb_001329_260 Hb_003320_030--Hb_001329_260 Hb_005116_020 Hb_005116_020 Hb_003320_030--Hb_005116_020 Hb_001159_210 Hb_001159_210 Hb_003320_030--Hb_001159_210 Hb_000038_150 Hb_000038_150 Hb_003320_030--Hb_000038_150 Hb_134732_010 Hb_134732_010 Hb_003320_030--Hb_134732_010 Hb_001892_160 Hb_001892_160 Hb_156144_020--Hb_001892_160 Hb_000175_530 Hb_000175_530 Hb_156144_020--Hb_000175_530 Hb_000580_060 Hb_000580_060 Hb_156144_020--Hb_000580_060 Hb_003494_260 Hb_003494_260 Hb_156144_020--Hb_003494_260 Hb_156144_020--Hb_001017_100 Hb_007634_020 Hb_007634_020 Hb_156144_020--Hb_007634_020 Hb_140595_010 Hb_140595_010 Hb_002483_020--Hb_140595_010 Hb_000062_380 Hb_000062_380 Hb_002483_020--Hb_000062_380 Hb_000318_260 Hb_000318_260 Hb_002483_020--Hb_000318_260 Hb_000088_030 Hb_000088_030 Hb_002483_020--Hb_000088_030 Hb_089140_080 Hb_089140_080 Hb_002483_020--Hb_089140_080 Hb_006631_010 Hb_006631_010 Hb_002483_020--Hb_006631_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.228582 0 0 0 0.72591 0.259936
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.133774 0 0 0.0873625 0

CAGE analysis