Hb_040562_010

Information

Type -
Description -
Location Contig40562: 5777-6654
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_040562_010 0.0 - - -
2 Hb_003108_010 0.2153572204 - - -
3 Hb_057655_010 0.2515049753 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
4 Hb_011179_040 0.2577969566 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001811_060 0.2834281725 - - PREDICTED: nicotinamidase 1-like isoform X1 [Jatropha curcas]
6 Hb_002307_130 0.2995015803 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000340_480 0.3038941253 - - -
8 Hb_003012_080 0.3171321812 - - ankyrin repeat-containing protein, putative [Ricinus communis]
9 Hb_001513_020 0.3186157264 - - PREDICTED: methionine aminopeptidase 1A isoform X1 [Jatropha curcas]
10 Hb_025299_010 0.3230925327 - - hypothetical protein JCGZ_01062 [Jatropha curcas]
11 Hb_000612_070 0.3309308624 - - conserved hypothetical protein [Ricinus communis]
12 Hb_002483_020 0.3390530758 - - -
13 Hb_004669_040 0.3441640994 - - ATPase inhibitor, putative [Ricinus communis]
14 Hb_002081_100 0.3450306544 - - -
15 Hb_000352_130 0.3464301048 - - hypothetical protein CISIN_1g0419111mg, partial [Citrus sinensis]
16 Hb_000256_270 0.3464959201 - - PREDICTED: large proline-rich protein bag6-B isoform X1 [Jatropha curcas]
17 Hb_077219_010 0.3482479616 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001116_020 0.3483753349 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPS2-like [Eucalyptus grandis]
19 Hb_004449_010 0.34849637 - - lipase [Ricinus communis]
20 Hb_001017_100 0.3490808615 - - PREDICTED: uncharacterized protein LOC105644705 [Jatropha curcas]

Gene co-expression network

sample Hb_040562_010 Hb_040562_010 Hb_003108_010 Hb_003108_010 Hb_040562_010--Hb_003108_010 Hb_057655_010 Hb_057655_010 Hb_040562_010--Hb_057655_010 Hb_011179_040 Hb_011179_040 Hb_040562_010--Hb_011179_040 Hb_001811_060 Hb_001811_060 Hb_040562_010--Hb_001811_060 Hb_002307_130 Hb_002307_130 Hb_040562_010--Hb_002307_130 Hb_000340_480 Hb_000340_480 Hb_040562_010--Hb_000340_480 Hb_003108_010--Hb_011179_040 Hb_000548_010 Hb_000548_010 Hb_003108_010--Hb_000548_010 Hb_003320_030 Hb_003320_030 Hb_003108_010--Hb_003320_030 Hb_156144_020 Hb_156144_020 Hb_003108_010--Hb_156144_020 Hb_002483_020 Hb_002483_020 Hb_003108_010--Hb_002483_020 Hb_001824_060 Hb_001824_060 Hb_057655_010--Hb_001824_060 Hb_057655_010--Hb_002307_130 Hb_002260_040 Hb_002260_040 Hb_057655_010--Hb_002260_040 Hb_000215_170 Hb_000215_170 Hb_057655_010--Hb_000215_170 Hb_001017_120 Hb_001017_120 Hb_057655_010--Hb_001017_120 Hb_008887_010 Hb_008887_010 Hb_011179_040--Hb_008887_010 Hb_007218_090 Hb_007218_090 Hb_011179_040--Hb_007218_090 Hb_027998_030 Hb_027998_030 Hb_011179_040--Hb_027998_030 Hb_011179_040--Hb_156144_020 Hb_000256_270 Hb_000256_270 Hb_001811_060--Hb_000256_270 Hb_006901_040 Hb_006901_040 Hb_001811_060--Hb_006901_040 Hb_000185_090 Hb_000185_090 Hb_001811_060--Hb_000185_090 Hb_002918_070 Hb_002918_070 Hb_001811_060--Hb_002918_070 Hb_000213_060 Hb_000213_060 Hb_001811_060--Hb_000213_060 Hb_000608_340 Hb_000608_340 Hb_001811_060--Hb_000608_340 Hb_010504_010 Hb_010504_010 Hb_002307_130--Hb_010504_010 Hb_000350_110 Hb_000350_110 Hb_002307_130--Hb_000350_110 Hb_002307_130--Hb_003108_010 Hb_007792_010 Hb_007792_010 Hb_002307_130--Hb_007792_010 Hb_002239_010 Hb_002239_010 Hb_002307_130--Hb_002239_010 Hb_002081_100 Hb_002081_100 Hb_000340_480--Hb_002081_100 Hb_004375_060 Hb_004375_060 Hb_000340_480--Hb_004375_060 Hb_000612_070 Hb_000612_070 Hb_000340_480--Hb_000612_070 Hb_005496_060 Hb_005496_060 Hb_000340_480--Hb_005496_060 Hb_004449_010 Hb_004449_010 Hb_000340_480--Hb_004449_010 Hb_002835_190 Hb_002835_190 Hb_000340_480--Hb_002835_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0511442 0 0 0 0.250745 0.217617
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.119306 0 0 0.0774575 0

CAGE analysis