Hb_001824_060

Information

Type -
Description -
Location Contig1824: 42264-48328
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001824_060 0.0 - - -
2 Hb_057655_010 0.2954199454 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
3 Hb_136696_010 0.2971409149 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
4 Hb_068804_160 0.2971565942 transcription factor TF Family: MIKC hypothetical protein JCGZ_12632 [Jatropha curcas]
5 Hb_002779_020 0.2971572641 - - transcription factor, putative [Ricinus communis]
6 Hb_115350_010 0.2971669543 - - PREDICTED: uncharacterized protein LOC105796032 [Gossypium raimondii]
7 Hb_061390_010 0.2972047886 - - PREDICTED: uncharacterized protein LOC105638675 [Jatropha curcas]
8 Hb_008880_010 0.2972082989 - - PREDICTED: receptor-like serine/threonine-protein kinase SD1-8 isoform X2 [Nelumbo nucifera]
9 Hb_004958_030 0.3206722577 - - PREDICTED: uncharacterized protein LOC104904188 [Beta vulgaris subsp. vulgaris]
10 Hb_004304_050 0.3244264703 - - PREDICTED: uncharacterized protein LOC105634770 [Jatropha curcas]
11 Hb_005183_160 0.3261573741 - - -
12 Hb_003918_040 0.3286935986 - - -
13 Hb_001798_050 0.3420550627 transcription factor TF Family: NAC NAC transcription factor 057 [Jatropha curcas]
14 Hb_017436_010 0.3497117712 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
15 Hb_002307_130 0.3584493948 - - conserved hypothetical protein [Ricinus communis]
16 Hb_007792_010 0.3613243897 - - PREDICTED: uncharacterized protein LOC105775124 [Gossypium raimondii]
17 Hb_012193_020 0.3695749113 - - PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
18 Hb_004532_010 0.3727029742 - - PREDICTED: uncharacterized protein LOC105800934 [Gossypium raimondii]
19 Hb_000599_060 0.3771199293 - - PREDICTED: legumin A-like [Jatropha curcas]
20 Hb_002260_040 0.3793854285 - - PREDICTED: putative ribonuclease H protein At1g65750 [Malus domestica]

Gene co-expression network

sample Hb_001824_060 Hb_001824_060 Hb_057655_010 Hb_057655_010 Hb_001824_060--Hb_057655_010 Hb_136696_010 Hb_136696_010 Hb_001824_060--Hb_136696_010 Hb_068804_160 Hb_068804_160 Hb_001824_060--Hb_068804_160 Hb_002779_020 Hb_002779_020 Hb_001824_060--Hb_002779_020 Hb_115350_010 Hb_115350_010 Hb_001824_060--Hb_115350_010 Hb_061390_010 Hb_061390_010 Hb_001824_060--Hb_061390_010 Hb_040562_010 Hb_040562_010 Hb_057655_010--Hb_040562_010 Hb_002307_130 Hb_002307_130 Hb_057655_010--Hb_002307_130 Hb_002260_040 Hb_002260_040 Hb_057655_010--Hb_002260_040 Hb_000215_170 Hb_000215_170 Hb_057655_010--Hb_000215_170 Hb_001017_120 Hb_001017_120 Hb_057655_010--Hb_001017_120 Hb_136696_010--Hb_002779_020 Hb_136696_010--Hb_115350_010 Hb_136696_010--Hb_061390_010 Hb_008880_010 Hb_008880_010 Hb_136696_010--Hb_008880_010 Hb_136696_010--Hb_068804_160 Hb_004304_050 Hb_004304_050 Hb_136696_010--Hb_004304_050 Hb_068804_160--Hb_002779_020 Hb_068804_160--Hb_115350_010 Hb_068804_160--Hb_061390_010 Hb_068804_160--Hb_008880_010 Hb_068804_160--Hb_004304_050 Hb_002779_020--Hb_115350_010 Hb_002779_020--Hb_061390_010 Hb_002779_020--Hb_008880_010 Hb_002779_020--Hb_004304_050 Hb_115350_010--Hb_061390_010 Hb_115350_010--Hb_008880_010 Hb_115350_010--Hb_004304_050 Hb_061390_010--Hb_008880_010 Hb_061390_010--Hb_004304_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0.0673054 0.0451281
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.159902 0 0 0 0

CAGE analysis