Hb_082730_010

Information

Type -
Description -
Location Contig82730: 27-1838
Sequence    

Annotation

kegg
ID tcc:TCM_009549
description DNA/RNA polymerases superfamily protein
nr
ID XP_009770762.1
description PREDICTED: uncharacterized protein LOC104221396 [Nicotiana sylvestris]
swissprot
ID P04323
description Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster GN=pol PE=3 SV=1
trembl
ID A0A061E6T4
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_009549 PE=4 SV=1
Gene Ontology
ID GO:0005488
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_082730_010 0.0 - - PREDICTED: uncharacterized protein LOC104221396 [Nicotiana sylvestris]
2 Hb_002240_080 0.25660153 - - -
3 Hb_011457_020 0.266366693 - - PREDICTED: uncharacterized protein LOC105649960 [Jatropha curcas]
4 Hb_094245_010 0.288206148 - - PREDICTED: uncharacterized protein LOC105634770 [Jatropha curcas]
5 Hb_004297_060 0.3020659736 - - Cucumisin protein [Theobroma cacao]
6 Hb_148908_020 0.3023692857 - - -
7 Hb_002180_010 0.3042691011 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
8 Hb_007101_010 0.3044306402 - - PREDICTED: 2-hydroxyisoflavanone dehydratase-like [Jatropha curcas]
9 Hb_003992_120 0.323339019 - - hypothetical protein MTR_6g089560 [Medicago truncatula]
10 Hb_002615_100 0.3372465392 - - -
11 Hb_158869_010 0.3374726851 - - PREDICTED: uncharacterized protein LOC105778995 [Gossypium raimondii]
12 Hb_004584_010 0.3403484235 - - PREDICTED: uncharacterized protein LOC104094989 [Nicotiana tomentosiformis]
13 Hb_000608_130 0.3428022392 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
14 Hb_035905_010 0.3447562327 - - PREDICTED: uncharacterized protein LOC105627956 [Jatropha curcas]
15 Hb_001495_060 0.3469394311 - - PREDICTED: probable aldo-keto reductase 1 [Jatropha curcas]
16 Hb_010812_090 0.3497458755 - - PREDICTED: serine/threonine-protein kinase AtPK2/AtPK19-like [Jatropha curcas]
17 Hb_003335_070 0.3525575612 - - -
18 Hb_005321_030 0.3536186034 transcription factor TF Family: MYB PREDICTED: myb-related protein Myb4 [Jatropha curcas]
19 Hb_010883_100 0.3569151884 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105638892 [Jatropha curcas]
20 Hb_006502_040 0.3669347783 transcription factor TF Family: bHLH Transcription factor ICE1, putative [Ricinus communis]

Gene co-expression network

sample Hb_082730_010 Hb_082730_010 Hb_002240_080 Hb_002240_080 Hb_082730_010--Hb_002240_080 Hb_011457_020 Hb_011457_020 Hb_082730_010--Hb_011457_020 Hb_094245_010 Hb_094245_010 Hb_082730_010--Hb_094245_010 Hb_004297_060 Hb_004297_060 Hb_082730_010--Hb_004297_060 Hb_148908_020 Hb_148908_020 Hb_082730_010--Hb_148908_020 Hb_002180_010 Hb_002180_010 Hb_082730_010--Hb_002180_010 Hb_002615_100 Hb_002615_100 Hb_002240_080--Hb_002615_100 Hb_006588_010 Hb_006588_010 Hb_002240_080--Hb_006588_010 Hb_006922_040 Hb_006922_040 Hb_002240_080--Hb_006922_040 Hb_002259_050 Hb_002259_050 Hb_002240_080--Hb_002259_050 Hb_035905_010 Hb_035905_010 Hb_002240_080--Hb_035905_010 Hb_021888_090 Hb_021888_090 Hb_011457_020--Hb_021888_090 Hb_148891_010 Hb_148891_010 Hb_011457_020--Hb_148891_010 Hb_000713_020 Hb_000713_020 Hb_011457_020--Hb_000713_020 Hb_011242_030 Hb_011242_030 Hb_011457_020--Hb_011242_030 Hb_003020_080 Hb_003020_080 Hb_011457_020--Hb_003020_080 Hb_003371_240 Hb_003371_240 Hb_094245_010--Hb_003371_240 Hb_094245_010--Hb_004297_060 Hb_094245_010--Hb_148908_020 Hb_000608_130 Hb_000608_130 Hb_094245_010--Hb_000608_130 Hb_032299_050 Hb_032299_050 Hb_094245_010--Hb_032299_050 Hb_004297_060--Hb_148908_020 Hb_004297_060--Hb_000608_130 Hb_001437_290 Hb_001437_290 Hb_004297_060--Hb_001437_290 Hb_000080_050 Hb_000080_050 Hb_004297_060--Hb_000080_050 Hb_011707_010 Hb_011707_010 Hb_004297_060--Hb_011707_010 Hb_076693_010 Hb_076693_010 Hb_004297_060--Hb_076693_010 Hb_148908_020--Hb_000608_130 Hb_148908_020--Hb_001437_290 Hb_148908_020--Hb_000080_050 Hb_117240_010 Hb_117240_010 Hb_002180_010--Hb_117240_010 Hb_000829_080 Hb_000829_080 Hb_002180_010--Hb_000829_080 Hb_010288_040 Hb_010288_040 Hb_002180_010--Hb_010288_040 Hb_006922_060 Hb_006922_060 Hb_002180_010--Hb_006922_060 Hb_003398_030 Hb_003398_030 Hb_002180_010--Hb_003398_030 Hb_008289_050 Hb_008289_050 Hb_002180_010--Hb_008289_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0435111 0.00965529 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0797343 0.0209112 0 0.0249963 0

CAGE analysis