Hb_117240_010

Information

Type -
Description -
Location Contig117240: 1315-2608
Sequence    

Annotation

kegg
ID cmo:103503101
description uncharacterized LOC103503101
nr
ID XP_012453148.1
description PREDICTED: uncharacterized protein LOC105775165 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A0B0MQD4
description Phosphate import ATP-binding PstB 2 OS=Gossypium arboreum GN=F383_30012 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_117240_010 0.0 - - PREDICTED: uncharacterized protein LOC105775165 [Gossypium raimondii]
2 Hb_002180_010 0.1943742793 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
3 Hb_000829_080 0.2161587755 - - PREDICTED: uncharacterized protein LOC105641027 [Jatropha curcas]
4 Hb_021888_090 0.2985839626 - - PREDICTED: putative CCR4-associated factor 1 homolog 8 isoform X1 [Malus domestica]
5 Hb_004788_040 0.3059008192 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
6 Hb_009012_010 0.3095327615 - - -
7 Hb_003100_010 0.3165708326 - - PREDICTED: uncharacterized protein LOC101217345 [Cucumis sativus]
8 Hb_002774_090 0.3207890076 - - conserved hypothetical protein [Ricinus communis]
9 Hb_007382_050 0.3276159536 - - PREDICTED: uncharacterized protein LOC105645009 [Jatropha curcas]
10 Hb_054328_010 0.3324027788 - - hypothetical protein POPTR_0019s09820g [Populus trichocarpa]
11 Hb_010288_040 0.3331543814 - - PREDICTED: transmembrane protein 205-like [Eucalyptus grandis]
12 Hb_004732_010 0.3345741084 - - -
13 Hb_007105_010 0.3355547557 - - PREDICTED: uncharacterized protein LOC103455579 [Malus domestica]
14 Hb_003052_200 0.3384771397 - - hypothetical protein POPTR_0010s14360g [Populus trichocarpa]
15 Hb_062006_010 0.3385162913 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
16 Hb_003623_070 0.339131986 - - ubiquitin-protein ligase, putative [Ricinus communis]
17 Hb_001117_070 0.3502988933 - - 30S ribosomal protein S19, putative [Ricinus communis]
18 Hb_001433_180 0.3522672199 - - hypothetical protein JCGZ_23261 [Jatropha curcas]
19 Hb_008289_050 0.3526003724 - - hypothetical protein B456_001G045900 [Gossypium raimondii]
20 Hb_002417_030 0.3526608861 - - PREDICTED: purine permease 3-like [Jatropha curcas]

Gene co-expression network

sample Hb_117240_010 Hb_117240_010 Hb_002180_010 Hb_002180_010 Hb_117240_010--Hb_002180_010 Hb_000829_080 Hb_000829_080 Hb_117240_010--Hb_000829_080 Hb_021888_090 Hb_021888_090 Hb_117240_010--Hb_021888_090 Hb_004788_040 Hb_004788_040 Hb_117240_010--Hb_004788_040 Hb_009012_010 Hb_009012_010 Hb_117240_010--Hb_009012_010 Hb_003100_010 Hb_003100_010 Hb_117240_010--Hb_003100_010 Hb_002180_010--Hb_000829_080 Hb_010288_040 Hb_010288_040 Hb_002180_010--Hb_010288_040 Hb_006922_060 Hb_006922_060 Hb_002180_010--Hb_006922_060 Hb_003398_030 Hb_003398_030 Hb_002180_010--Hb_003398_030 Hb_008289_050 Hb_008289_050 Hb_002180_010--Hb_008289_050 Hb_004732_010 Hb_004732_010 Hb_000829_080--Hb_004732_010 Hb_007451_060 Hb_007451_060 Hb_000829_080--Hb_007451_060 Hb_000829_080--Hb_010288_040 Hb_000829_080--Hb_004788_040 Hb_011457_020 Hb_011457_020 Hb_021888_090--Hb_011457_020 Hb_001341_110 Hb_001341_110 Hb_021888_090--Hb_001341_110 Hb_021888_090--Hb_002180_010 Hb_003209_050 Hb_003209_050 Hb_021888_090--Hb_003209_050 Hb_021888_090--Hb_000829_080 Hb_003623_070 Hb_003623_070 Hb_004788_040--Hb_003623_070 Hb_001635_050 Hb_001635_050 Hb_004788_040--Hb_001635_050 Hb_001269_690 Hb_001269_690 Hb_004788_040--Hb_001269_690 Hb_000140_410 Hb_000140_410 Hb_004788_040--Hb_000140_410 Hb_001529_050 Hb_001529_050 Hb_004788_040--Hb_001529_050 Hb_001104_240 Hb_001104_240 Hb_004788_040--Hb_001104_240 Hb_000107_320 Hb_000107_320 Hb_009012_010--Hb_000107_320 Hb_006452_130 Hb_006452_130 Hb_009012_010--Hb_006452_130 Hb_000402_010 Hb_000402_010 Hb_009012_010--Hb_000402_010 Hb_005975_020 Hb_005975_020 Hb_009012_010--Hb_005975_020 Hb_054328_010 Hb_054328_010 Hb_009012_010--Hb_054328_010 Hb_000142_020 Hb_000142_020 Hb_003100_010--Hb_000142_020 Hb_000625_110 Hb_000625_110 Hb_003100_010--Hb_000625_110 Hb_038758_010 Hb_038758_010 Hb_003100_010--Hb_038758_010 Hb_008695_030 Hb_008695_030 Hb_003100_010--Hb_008695_030 Hb_008453_070 Hb_008453_070 Hb_003100_010--Hb_008453_070 Hb_002063_030 Hb_002063_030 Hb_003100_010--Hb_002063_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0539865 0.133264 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0494445 0.0388887 0 0.0937891 0

CAGE analysis