Hb_094245_010

Information

Type -
Description -
Location Contig94245: 36-3068
Sequence    

Annotation

kegg
ID pxb:103927756
description uncharacterized LOC103927756
nr
ID XP_012073065.1
description PREDICTED: uncharacterized protein LOC105634770 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID Q7XYU4
description Integrase (Fragment) OS=Gossypium herbaceum PE=4 SV=1
Gene Ontology
ID GO:0003824
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_094245_010 0.0 - - PREDICTED: uncharacterized protein LOC105634770 [Jatropha curcas]
2 Hb_082730_010 0.288206148 - - PREDICTED: uncharacterized protein LOC104221396 [Nicotiana sylvestris]
3 Hb_003371_240 0.3029493792 - - hypothetical protein JCGZ_16702 [Jatropha curcas]
4 Hb_004297_060 0.3051119622 - - Cucumisin protein [Theobroma cacao]
5 Hb_148908_020 0.3052564569 - - -
6 Hb_000608_130 0.3305591377 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
7 Hb_032299_050 0.3399629162 - - -
8 Hb_074197_060 0.355669058 - - PREDICTED: probable protein S-acyltransferase 14 isoform X1 [Populus euphratica]
9 Hb_010490_030 0.3577401838 - - -
10 Hb_004732_010 0.3732257161 - - -
11 Hb_002180_010 0.3783361197 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
12 Hb_011457_020 0.37932758 - - PREDICTED: uncharacterized protein LOC105649960 [Jatropha curcas]
13 Hb_000080_050 0.3960183489 - - PREDICTED: pentatricopeptide repeat-containing protein At4g38150-like [Vitis vinifera]
14 Hb_117240_010 0.4048449294 - - PREDICTED: uncharacterized protein LOC105775165 [Gossypium raimondii]
15 Hb_010883_100 0.4096923447 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105638892 [Jatropha curcas]
16 Hb_005779_050 0.4142428699 - - hypothetical protein JCGZ_14616 [Jatropha curcas]
17 Hb_007181_040 0.4181280695 - - -
18 Hb_000829_080 0.4189834764 - - PREDICTED: uncharacterized protein LOC105641027 [Jatropha curcas]
19 Hb_001437_290 0.4228060414 - - -
20 Hb_115784_010 0.4234189433 - - PREDICTED: uncharacterized protein LOC104227769, partial [Nicotiana sylvestris]

Gene co-expression network

sample Hb_094245_010 Hb_094245_010 Hb_082730_010 Hb_082730_010 Hb_094245_010--Hb_082730_010 Hb_003371_240 Hb_003371_240 Hb_094245_010--Hb_003371_240 Hb_004297_060 Hb_004297_060 Hb_094245_010--Hb_004297_060 Hb_148908_020 Hb_148908_020 Hb_094245_010--Hb_148908_020 Hb_000608_130 Hb_000608_130 Hb_094245_010--Hb_000608_130 Hb_032299_050 Hb_032299_050 Hb_094245_010--Hb_032299_050 Hb_002240_080 Hb_002240_080 Hb_082730_010--Hb_002240_080 Hb_011457_020 Hb_011457_020 Hb_082730_010--Hb_011457_020 Hb_082730_010--Hb_004297_060 Hb_082730_010--Hb_148908_020 Hb_002180_010 Hb_002180_010 Hb_082730_010--Hb_002180_010 Hb_003371_240--Hb_032299_050 Hb_011037_010 Hb_011037_010 Hb_003371_240--Hb_011037_010 Hb_003058_050 Hb_003058_050 Hb_003371_240--Hb_003058_050 Hb_002099_020 Hb_002099_020 Hb_003371_240--Hb_002099_020 Hb_000205_170 Hb_000205_170 Hb_003371_240--Hb_000205_170 Hb_004297_060--Hb_148908_020 Hb_004297_060--Hb_000608_130 Hb_001437_290 Hb_001437_290 Hb_004297_060--Hb_001437_290 Hb_000080_050 Hb_000080_050 Hb_004297_060--Hb_000080_050 Hb_011707_010 Hb_011707_010 Hb_004297_060--Hb_011707_010 Hb_076693_010 Hb_076693_010 Hb_004297_060--Hb_076693_010 Hb_148908_020--Hb_000608_130 Hb_148908_020--Hb_001437_290 Hb_148908_020--Hb_000080_050 Hb_000608_130--Hb_000080_050 Hb_007713_020 Hb_007713_020 Hb_000608_130--Hb_007713_020 Hb_012522_020 Hb_012522_020 Hb_000608_130--Hb_012522_020 Hb_048125_010 Hb_048125_010 Hb_000608_130--Hb_048125_010 Hb_000836_200 Hb_000836_200 Hb_032299_050--Hb_000836_200 Hb_003861_130 Hb_003861_130 Hb_032299_050--Hb_003861_130 Hb_001623_030 Hb_001623_030 Hb_032299_050--Hb_001623_030 Hb_004102_120 Hb_004102_120 Hb_032299_050--Hb_004102_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00876156 0.00722489 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0198976 0 0 0.00622257 0

CAGE analysis