Hb_003058_050

Information

Type -
Description -
Location Contig3058: 22950-32665
Sequence    

Annotation

kegg
ID sly:104646181
description uncharacterized LOC104646181
nr
ID XP_012075160.1
description PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A061DPQ5
description Uncharacterized protein OS=Theobroma cacao GN=TCM_003164 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003058_050 0.0 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
2 Hb_011037_010 0.0011854453 - - PREDICTED: uncharacterized protein LOC105778976 [Gossypium raimondii]
3 Hb_002099_020 0.0017928286 - - cysteine proteinase inhibitor-like [Jatropha curcas]
4 Hb_000205_170 0.047858078 - - PREDICTED: uncharacterized protein LOC103926801 [Pyrus x bretschneideri]
5 Hb_092027_010 0.0983963349 - - PREDICTED: uncharacterized protein LOC105761643 [Gossypium raimondii]
6 Hb_076693_010 0.0990036315 - - PREDICTED: beta-glucosidase 11-like isoform X2 [Jatropha curcas]
7 Hb_011707_010 0.0991965881 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
8 Hb_001135_230 0.1354270107 - - PREDICTED: protein REVEILLE 6-like isoform X3 [Gossypium raimondii]
9 Hb_008031_020 0.1411819668 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
10 Hb_001831_020 0.1416892086 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
11 Hb_000058_220 0.142645951 - - hypothetical protein, partial [Staphylococcus aureus]
12 Hb_019677_010 0.1429677113 - - PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
13 Hb_048125_010 0.1463468725 - - PREDICTED: uncharacterized protein LOC104104928 [Nicotiana tomentosiformis]
14 Hb_012522_020 0.1490589967 - - -
15 Hb_007713_020 0.2062749159 - - -
16 Hb_022212_010 0.2634217824 - - -
17 Hb_000345_470 0.2805666172 - - PREDICTED: putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 5 [Jatropha curcas]
18 Hb_001437_290 0.2903603522 - - -
19 Hb_004297_060 0.3140377492 - - Cucumisin protein [Theobroma cacao]
20 Hb_003371_240 0.3223539275 - - hypothetical protein JCGZ_16702 [Jatropha curcas]

Gene co-expression network

sample Hb_003058_050 Hb_003058_050 Hb_011037_010 Hb_011037_010 Hb_003058_050--Hb_011037_010 Hb_002099_020 Hb_002099_020 Hb_003058_050--Hb_002099_020 Hb_000205_170 Hb_000205_170 Hb_003058_050--Hb_000205_170 Hb_092027_010 Hb_092027_010 Hb_003058_050--Hb_092027_010 Hb_076693_010 Hb_076693_010 Hb_003058_050--Hb_076693_010 Hb_011707_010 Hb_011707_010 Hb_003058_050--Hb_011707_010 Hb_011037_010--Hb_002099_020 Hb_011037_010--Hb_000205_170 Hb_011037_010--Hb_092027_010 Hb_011037_010--Hb_076693_010 Hb_011037_010--Hb_011707_010 Hb_002099_020--Hb_000205_170 Hb_002099_020--Hb_092027_010 Hb_002099_020--Hb_076693_010 Hb_002099_020--Hb_011707_010 Hb_001135_230 Hb_001135_230 Hb_000205_170--Hb_001135_230 Hb_000205_170--Hb_092027_010 Hb_000205_170--Hb_076693_010 Hb_092027_010--Hb_076693_010 Hb_092027_010--Hb_011707_010 Hb_008031_020 Hb_008031_020 Hb_092027_010--Hb_008031_020 Hb_001831_020 Hb_001831_020 Hb_092027_010--Hb_001831_020 Hb_000058_220 Hb_000058_220 Hb_092027_010--Hb_000058_220 Hb_019677_010 Hb_019677_010 Hb_092027_010--Hb_019677_010 Hb_076693_010--Hb_011707_010 Hb_076693_010--Hb_008031_020 Hb_076693_010--Hb_001831_020 Hb_076693_010--Hb_000058_220 Hb_076693_010--Hb_019677_010 Hb_011707_010--Hb_008031_020 Hb_011707_010--Hb_001831_020 Hb_011707_010--Hb_000058_220 Hb_011707_010--Hb_019677_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0240494 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0273646 0 0 0 0

CAGE analysis