Hb_001135_230

Information

Type -
Description -
Location Contig1135: 290333-290677
Sequence    

Annotation

kegg
ID csv:101224468
description transcription factor ASG4-like
nr
ID XP_012440108.1
description PREDICTED: protein REVEILLE 6-like isoform X3 [Gossypium raimondii]
swissprot
ID Q8H0W3
description Protein REVEILLE 6 OS=Arabidopsis thaliana GN=RVE6 PE=2 SV=1
trembl
ID A0A0D2T7Z5
description Gossypium raimondii chromosome 8, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_008G274500 PE=4 SV=1
Gene Ontology
ID GO:0003677
description homeodomain-like superfamily protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001135_230 0.0 - - PREDICTED: protein REVEILLE 6-like isoform X3 [Gossypium raimondii]
2 Hb_000205_170 0.0877686369 - - PREDICTED: uncharacterized protein LOC103926801 [Pyrus x bretschneideri]
3 Hb_002099_020 0.133645474 - - cysteine proteinase inhibitor-like [Jatropha curcas]
4 Hb_003058_050 0.1354270107 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
5 Hb_011037_010 0.1366048271 - - PREDICTED: uncharacterized protein LOC105778976 [Gossypium raimondii]
6 Hb_092027_010 0.2327448846 - - PREDICTED: uncharacterized protein LOC105761643 [Gossypium raimondii]
7 Hb_076693_010 0.23334266 - - PREDICTED: beta-glucosidase 11-like isoform X2 [Jatropha curcas]
8 Hb_011707_010 0.2335325838 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
9 Hb_001437_290 0.2352056219 - - -
10 Hb_008031_020 0.2747688163 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
11 Hb_001831_020 0.275265896 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
12 Hb_000058_220 0.2762033968 - - hypothetical protein, partial [Staphylococcus aureus]
13 Hb_019677_010 0.2765186643 - - PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
14 Hb_048125_010 0.2798289732 - - PREDICTED: uncharacterized protein LOC104104928 [Nicotiana tomentosiformis]
15 Hb_012522_020 0.2824849558 - - -
16 Hb_026766_010 0.2914578105 - - -
17 Hb_000345_470 0.2993199698 - - PREDICTED: putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 5 [Jatropha curcas]
18 Hb_009777_010 0.3167655628 - - PREDICTED: uncharacterized protein LOC104120414 [Nicotiana tomentosiformis]
19 Hb_000284_160 0.3176606136 - - PREDICTED: TMV resistance protein N-like [Jatropha curcas]
20 Hb_000614_330 0.3212646166 - - hypothetical protein POPTR_0008s18070g [Populus trichocarpa]

Gene co-expression network

sample Hb_001135_230 Hb_001135_230 Hb_000205_170 Hb_000205_170 Hb_001135_230--Hb_000205_170 Hb_002099_020 Hb_002099_020 Hb_001135_230--Hb_002099_020 Hb_003058_050 Hb_003058_050 Hb_001135_230--Hb_003058_050 Hb_011037_010 Hb_011037_010 Hb_001135_230--Hb_011037_010 Hb_092027_010 Hb_092027_010 Hb_001135_230--Hb_092027_010 Hb_076693_010 Hb_076693_010 Hb_001135_230--Hb_076693_010 Hb_000205_170--Hb_002099_020 Hb_000205_170--Hb_003058_050 Hb_000205_170--Hb_011037_010 Hb_000205_170--Hb_092027_010 Hb_000205_170--Hb_076693_010 Hb_002099_020--Hb_003058_050 Hb_002099_020--Hb_011037_010 Hb_002099_020--Hb_092027_010 Hb_002099_020--Hb_076693_010 Hb_011707_010 Hb_011707_010 Hb_002099_020--Hb_011707_010 Hb_003058_050--Hb_011037_010 Hb_003058_050--Hb_092027_010 Hb_003058_050--Hb_076693_010 Hb_003058_050--Hb_011707_010 Hb_011037_010--Hb_092027_010 Hb_011037_010--Hb_076693_010 Hb_011037_010--Hb_011707_010 Hb_092027_010--Hb_076693_010 Hb_092027_010--Hb_011707_010 Hb_008031_020 Hb_008031_020 Hb_092027_010--Hb_008031_020 Hb_001831_020 Hb_001831_020 Hb_092027_010--Hb_001831_020 Hb_000058_220 Hb_000058_220 Hb_092027_010--Hb_000058_220 Hb_019677_010 Hb_019677_010 Hb_092027_010--Hb_019677_010 Hb_076693_010--Hb_011707_010 Hb_076693_010--Hb_008031_020 Hb_076693_010--Hb_001831_020 Hb_076693_010--Hb_000058_220 Hb_076693_010--Hb_019677_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.451734 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.269703 0 0 0 0

CAGE analysis