Hb_002240_080

Information

Type -
Description -
Location Contig2240: 43652-44208
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002240_080 0.0 - - -
2 Hb_002615_100 0.1498694592 - - -
3 Hb_082730_010 0.25660153 - - PREDICTED: uncharacterized protein LOC104221396 [Nicotiana sylvestris]
4 Hb_006588_010 0.2583505855 - - -
5 Hb_006922_040 0.2588764626 - - UDP-glucuronosyltransferase, putative [Ricinus communis]
6 Hb_002259_050 0.264471628 - - unnamed protein product [Vitis vinifera]
7 Hb_035905_010 0.2667539935 - - PREDICTED: uncharacterized protein LOC105627956 [Jatropha curcas]
8 Hb_081207_010 0.2682766277 - - hypothetical protein JCGZ_17195 [Jatropha curcas]
9 Hb_009954_050 0.2691774082 - - PREDICTED: uncharacterized protein LOC104611877 isoform X2 [Nelumbo nucifera]
10 Hb_000445_220 0.2797221451 - - -
11 Hb_000011_340 0.298823353 - - PREDICTED: protein LURP-one-related 11-like [Jatropha curcas]
12 Hb_001520_020 0.2988488218 - - PREDICTED: metal tolerance protein C2 [Jatropha curcas]
13 Hb_175450_010 0.3058595234 - - -
14 Hb_002431_060 0.3103487489 - - -
15 Hb_003992_120 0.312291656 - - hypothetical protein MTR_6g089560 [Medicago truncatula]
16 Hb_002228_090 0.3125858517 - - hypothetical protein POPTR_0006s23560g [Populus trichocarpa]
17 Hb_000917_010 0.3144222535 - - conserved hypothetical protein [Ricinus communis]
18 Hb_158869_010 0.318752533 - - PREDICTED: uncharacterized protein LOC105778995 [Gossypium raimondii]
19 Hb_153216_010 0.3238965154 - - PREDICTED: uncharacterized protein LOC105797726 [Gossypium raimondii]
20 Hb_000501_020 0.3240293666 - - PREDICTED: uncharacterized protein LOC100250168 [Vitis vinifera]

Gene co-expression network

sample Hb_002240_080 Hb_002240_080 Hb_002615_100 Hb_002615_100 Hb_002240_080--Hb_002615_100 Hb_082730_010 Hb_082730_010 Hb_002240_080--Hb_082730_010 Hb_006588_010 Hb_006588_010 Hb_002240_080--Hb_006588_010 Hb_006922_040 Hb_006922_040 Hb_002240_080--Hb_006922_040 Hb_002259_050 Hb_002259_050 Hb_002240_080--Hb_002259_050 Hb_035905_010 Hb_035905_010 Hb_002240_080--Hb_035905_010 Hb_175450_010 Hb_175450_010 Hb_002615_100--Hb_175450_010 Hb_002228_090 Hb_002228_090 Hb_002615_100--Hb_002228_090 Hb_081207_010 Hb_081207_010 Hb_002615_100--Hb_081207_010 Hb_002615_100--Hb_006588_010 Hb_002615_100--Hb_002259_050 Hb_011457_020 Hb_011457_020 Hb_082730_010--Hb_011457_020 Hb_094245_010 Hb_094245_010 Hb_082730_010--Hb_094245_010 Hb_004297_060 Hb_004297_060 Hb_082730_010--Hb_004297_060 Hb_148908_020 Hb_148908_020 Hb_082730_010--Hb_148908_020 Hb_002180_010 Hb_002180_010 Hb_082730_010--Hb_002180_010 Hb_012163_030 Hb_012163_030 Hb_006588_010--Hb_012163_030 Hb_001427_140 Hb_001427_140 Hb_006588_010--Hb_001427_140 Hb_006588_010--Hb_006922_040 Hb_006588_010--Hb_002228_090 Hb_001186_080 Hb_001186_080 Hb_006588_010--Hb_001186_080 Hb_000445_220 Hb_000445_220 Hb_006922_040--Hb_000445_220 Hb_006922_040--Hb_081207_010 Hb_000501_020 Hb_000501_020 Hb_006922_040--Hb_000501_020 Hb_006922_040--Hb_002259_050 Hb_006922_040--Hb_002228_090 Hb_000184_190 Hb_000184_190 Hb_006922_040--Hb_000184_190 Hb_002259_050--Hb_081207_010 Hb_002259_050--Hb_175450_010 Hb_002259_050--Hb_000445_220 Hb_002431_060 Hb_002431_060 Hb_002259_050--Hb_002431_060 Hb_002259_050--Hb_002228_090 Hb_004691_040 Hb_004691_040 Hb_035905_010--Hb_004691_040 Hb_000260_450 Hb_000260_450 Hb_035905_010--Hb_000260_450 Hb_003992_120 Hb_003992_120 Hb_035905_010--Hb_003992_120 Hb_004116_110 Hb_004116_110 Hb_035905_010--Hb_004116_110 Hb_001141_400 Hb_001141_400 Hb_035905_010--Hb_001141_400 Hb_000061_350 Hb_000061_350 Hb_035905_010--Hb_000061_350
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0645105 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.151618 0.119098 0 0.0498864 0

CAGE analysis