Hb_001427_140

Information

Type -
Description -
Location Contig1427: 138945-140039
Sequence    

Annotation

kegg
ID pop:POPTR_0006s15420g
description POPTRDRAFT_819270; hypothetical protein
nr
ID XP_012076796.1
description PREDICTED: probable phospholipase A2 homolog 1 [Jatropha curcas]
swissprot
ID Q9XG80
description Probable phospholipase A2 homolog 1 OS=Oryza sativa subsp. japonica GN=PLA2-I PE=2 SV=1
trembl
ID A0A067KCB1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07318 PE=4 SV=1
Gene Ontology
ID GO:0016787
description probable phospholipase a2 homolog 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11318: 139488-139601
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001427_140 0.0 - - PREDICTED: probable phospholipase A2 homolog 1 [Jatropha curcas]
2 Hb_115326_010 0.2218079385 - - -
3 Hb_000282_140 0.2367055256 - - hypothetical protein JCGZ_07670 [Jatropha curcas]
4 Hb_006588_010 0.2408521334 - - -
5 Hb_081207_010 0.2788452217 - - hypothetical protein JCGZ_17195 [Jatropha curcas]
6 Hb_002228_090 0.2868303397 - - hypothetical protein POPTR_0006s23560g [Populus trichocarpa]
7 Hb_175450_010 0.2871752243 - - -
8 Hb_000088_210 0.2877097644 - - hypothetical protein POPTR_0013s11310g [Populus trichocarpa]
9 Hb_002259_050 0.2881997759 - - unnamed protein product [Vitis vinifera]
10 Hb_084889_010 0.2897475274 - - PREDICTED: uncharacterized protein LOC105638918 [Jatropha curcas]
11 Hb_001519_070 0.2921042635 - - hypothetical protein JCGZ_09841 [Jatropha curcas]
12 Hb_002768_020 0.294076139 transcription factor TF Family: MYB hypothetical protein JCGZ_00902 [Jatropha curcas]
13 Hb_005736_040 0.3076335847 - - -
14 Hb_000445_220 0.3104059859 - - -
15 Hb_006922_040 0.3150255866 - - UDP-glucuronosyltransferase, putative [Ricinus communis]
16 Hb_002431_060 0.3167145393 - - -
17 Hb_000123_200 0.3232241298 - - PREDICTED: WAT1-related protein At2g39510 [Jatropha curcas]
18 Hb_160366_010 0.3236027138 - - PREDICTED: uncharacterized protein LOC104894399 [Beta vulgaris subsp. vulgaris]
19 Hb_002615_100 0.3396365984 - - -
20 Hb_000275_010 0.3400400122 - - -

Gene co-expression network

sample Hb_001427_140 Hb_001427_140 Hb_115326_010 Hb_115326_010 Hb_001427_140--Hb_115326_010 Hb_000282_140 Hb_000282_140 Hb_001427_140--Hb_000282_140 Hb_006588_010 Hb_006588_010 Hb_001427_140--Hb_006588_010 Hb_081207_010 Hb_081207_010 Hb_001427_140--Hb_081207_010 Hb_002228_090 Hb_002228_090 Hb_001427_140--Hb_002228_090 Hb_175450_010 Hb_175450_010 Hb_001427_140--Hb_175450_010 Hb_115326_010--Hb_175450_010 Hb_001519_070 Hb_001519_070 Hb_115326_010--Hb_001519_070 Hb_115326_010--Hb_000282_140 Hb_002259_050 Hb_002259_050 Hb_115326_010--Hb_002259_050 Hb_004584_010 Hb_004584_010 Hb_115326_010--Hb_004584_010 Hb_001799_040 Hb_001799_040 Hb_000282_140--Hb_001799_040 Hb_000641_040 Hb_000641_040 Hb_000282_140--Hb_000641_040 Hb_002768_020 Hb_002768_020 Hb_000282_140--Hb_002768_020 Hb_109578_010 Hb_109578_010 Hb_000282_140--Hb_109578_010 Hb_000275_010 Hb_000275_010 Hb_000282_140--Hb_000275_010 Hb_012163_030 Hb_012163_030 Hb_006588_010--Hb_012163_030 Hb_002615_100 Hb_002615_100 Hb_006588_010--Hb_002615_100 Hb_006922_040 Hb_006922_040 Hb_006588_010--Hb_006922_040 Hb_006588_010--Hb_002228_090 Hb_001186_080 Hb_001186_080 Hb_006588_010--Hb_001186_080 Hb_000445_220 Hb_000445_220 Hb_081207_010--Hb_000445_220 Hb_081207_010--Hb_002259_050 Hb_081207_010--Hb_006922_040 Hb_081207_010--Hb_002228_090 Hb_081207_010--Hb_175450_010 Hb_002431_060 Hb_002431_060 Hb_081207_010--Hb_002431_060 Hb_002228_090--Hb_175450_010 Hb_000184_190 Hb_000184_190 Hb_002228_090--Hb_000184_190 Hb_002228_090--Hb_000445_220 Hb_002228_090--Hb_006922_040 Hb_002228_090--Hb_002259_050 Hb_175450_010--Hb_002259_050 Hb_175450_010--Hb_002615_100 Hb_175450_010--Hb_002431_060 Hb_175450_010--Hb_000445_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.348659 0 0.273416 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.575696 0.753643 0 0 0

CAGE analysis