Hb_001519_070

Information

Type -
Description -
Location Contig1519: 36492-37669
Sequence    

Annotation

kegg
ID egr:104427692
description probable LRR receptor-like serine/threonine-protein kinase At4g08850
nr
ID KDP36276.1
description hypothetical protein JCGZ_09841 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KJ90
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09841 PE=4 SV=1
Gene Ontology
ID GO:0016020
description probable leucine-rich repeat receptor-like protein kinase at1g35710

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001519_070 0.0 - - hypothetical protein JCGZ_09841 [Jatropha curcas]
2 Hb_000088_210 0.1695671028 - - hypothetical protein POPTR_0013s11310g [Populus trichocarpa]
3 Hb_115326_010 0.258421144 - - -
4 Hb_000861_010 0.268335366 - - -
5 Hb_001427_140 0.2921042635 - - PREDICTED: probable phospholipase A2 homolog 1 [Jatropha curcas]
6 Hb_173902_040 0.3179499757 - - -
7 Hb_167364_020 0.3333504448 - - -
8 Hb_001519_180 0.3375932061 - - Squalene monooxygenase, putative [Ricinus communis]
9 Hb_004230_030 0.3394927523 - - hypothetical protein CISIN_1g043871mg [Citrus sinensis]
10 Hb_024399_030 0.3429121933 - - conserved hypothetical protein [Ricinus communis]
11 Hb_153216_010 0.3657781029 - - PREDICTED: uncharacterized protein LOC105797726 [Gossypium raimondii]
12 Hb_000282_140 0.3686558263 - - hypothetical protein JCGZ_07670 [Jatropha curcas]
13 Hb_005779_070 0.3721670574 - - -
14 Hb_005952_020 0.3727501557 - - -
15 Hb_010589_100 0.3747746216 - - Thioredoxin domain-containing protein 9-like protein [Morus notabilis]
16 Hb_004324_020 0.3770676028 - - -
17 Hb_003018_110 0.3774992482 - - -
18 Hb_127008_010 0.3791183014 - - PREDICTED: uncharacterized protein LOC105629501 [Jatropha curcas]
19 Hb_005545_030 0.3833702353 - - PREDICTED: uncharacterized protein LOC105645697 [Jatropha curcas]
20 Hb_000099_230 0.3835863094 - - PREDICTED: F-box protein SKIP19-like [Gossypium raimondii]

Gene co-expression network

sample Hb_001519_070 Hb_001519_070 Hb_000088_210 Hb_000088_210 Hb_001519_070--Hb_000088_210 Hb_115326_010 Hb_115326_010 Hb_001519_070--Hb_115326_010 Hb_000861_010 Hb_000861_010 Hb_001519_070--Hb_000861_010 Hb_001427_140 Hb_001427_140 Hb_001519_070--Hb_001427_140 Hb_173902_040 Hb_173902_040 Hb_001519_070--Hb_173902_040 Hb_167364_020 Hb_167364_020 Hb_001519_070--Hb_167364_020 Hb_000088_210--Hb_000861_010 Hb_000088_210--Hb_001427_140 Hb_000088_210--Hb_173902_040 Hb_127008_010 Hb_127008_010 Hb_000088_210--Hb_127008_010 Hb_000099_230 Hb_000099_230 Hb_000088_210--Hb_000099_230 Hb_115326_010--Hb_001427_140 Hb_175450_010 Hb_175450_010 Hb_115326_010--Hb_175450_010 Hb_000282_140 Hb_000282_140 Hb_115326_010--Hb_000282_140 Hb_002259_050 Hb_002259_050 Hb_115326_010--Hb_002259_050 Hb_004584_010 Hb_004584_010 Hb_115326_010--Hb_004584_010 Hb_003225_030 Hb_003225_030 Hb_000861_010--Hb_003225_030 Hb_000516_070 Hb_000516_070 Hb_000861_010--Hb_000516_070 Hb_018599_010 Hb_018599_010 Hb_000861_010--Hb_018599_010 Hb_011689_130 Hb_011689_130 Hb_000861_010--Hb_011689_130 Hb_001427_140--Hb_000282_140 Hb_006588_010 Hb_006588_010 Hb_001427_140--Hb_006588_010 Hb_081207_010 Hb_081207_010 Hb_001427_140--Hb_081207_010 Hb_002228_090 Hb_002228_090 Hb_001427_140--Hb_002228_090 Hb_001427_140--Hb_175450_010 Hb_001493_110 Hb_001493_110 Hb_173902_040--Hb_001493_110 Hb_003702_040 Hb_003702_040 Hb_173902_040--Hb_003702_040 Hb_006096_040 Hb_006096_040 Hb_173902_040--Hb_006096_040 Hb_001519_180 Hb_001519_180 Hb_173902_040--Hb_001519_180 Hb_005545_030 Hb_005545_030 Hb_173902_040--Hb_005545_030 Hb_000789_100 Hb_000789_100 Hb_173902_040--Hb_000789_100 Hb_005743_090 Hb_005743_090 Hb_167364_020--Hb_005743_090 Hb_000513_080 Hb_000513_080 Hb_167364_020--Hb_000513_080 Hb_000866_360 Hb_000866_360 Hb_167364_020--Hb_000866_360 Hb_004522_020 Hb_004522_020 Hb_167364_020--Hb_004522_020 Hb_000189_060 Hb_000189_060 Hb_167364_020--Hb_000189_060 Hb_167364_020--Hb_000516_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.99383 0 1.31777 0 0.530373 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.997055 1.59854 0 0 0

CAGE analysis