Hb_003992_010

Information

Type -
Description -
Location Contig3992: 1828-3411
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003992_010 0.0 - - -
2 Hb_034243_030 0.1070118228 - - B3 domain-containing protein [Medicago truncatula]
3 Hb_002461_050 0.1389372493 - - -
4 Hb_015183_040 0.2050512679 - - -
5 Hb_126508_010 0.2507769771 - - -
6 Hb_000345_470 0.2882536063 - - PREDICTED: putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 5 [Jatropha curcas]
7 Hb_105061_010 0.3093852519 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
8 Hb_001999_270 0.3236647167 - - PREDICTED: uncharacterized protein LOC105644961 [Jatropha curcas]
9 Hb_153258_060 0.3289501133 - - -
10 Hb_001959_230 0.3404217982 - - PREDICTED: uncharacterized protein LOC105638436 [Jatropha curcas]
11 Hb_113444_010 0.3404875333 - - -
12 Hb_174245_020 0.3410677868 - - -
13 Hb_000429_060 0.3412563789 - - conserved hypothetical protein [Ricinus communis]
14 Hb_069877_010 0.3427852752 - - chaperone protein DNAj, putative [Ricinus communis]
15 Hb_135811_030 0.3433240469 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
16 Hb_001761_110 0.3495617269 - - Contains similarity to Cf-2.2 gene gb
17 Hb_131101_010 0.350516122 - - -
18 Hb_014720_060 0.3542050344 - - hypothetical protein JCGZ_11469 [Jatropha curcas]
19 Hb_000441_010 0.3543930151 - - PREDICTED: uncharacterized protein LOC105650390, partial [Jatropha curcas]
20 Hb_002545_030 0.3557033042 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]

Gene co-expression network

sample Hb_003992_010 Hb_003992_010 Hb_034243_030 Hb_034243_030 Hb_003992_010--Hb_034243_030 Hb_002461_050 Hb_002461_050 Hb_003992_010--Hb_002461_050 Hb_015183_040 Hb_015183_040 Hb_003992_010--Hb_015183_040 Hb_126508_010 Hb_126508_010 Hb_003992_010--Hb_126508_010 Hb_000345_470 Hb_000345_470 Hb_003992_010--Hb_000345_470 Hb_105061_010 Hb_105061_010 Hb_003992_010--Hb_105061_010 Hb_034243_030--Hb_015183_040 Hb_034243_030--Hb_002461_050 Hb_034243_030--Hb_000345_470 Hb_001999_270 Hb_001999_270 Hb_034243_030--Hb_001999_270 Hb_034243_030--Hb_126508_010 Hb_002461_050--Hb_126508_010 Hb_002461_050--Hb_000345_470 Hb_002461_050--Hb_015183_040 Hb_002461_050--Hb_105061_010 Hb_015183_040--Hb_001999_270 Hb_004491_020 Hb_004491_020 Hb_015183_040--Hb_004491_020 Hb_000264_150 Hb_000264_150 Hb_015183_040--Hb_000264_150 Hb_126508_010--Hb_000345_470 Hb_126508_010--Hb_105061_010 Hb_000274_030 Hb_000274_030 Hb_126508_010--Hb_000274_030 Hb_002099_020 Hb_002099_020 Hb_000345_470--Hb_002099_020 Hb_000205_170 Hb_000205_170 Hb_000345_470--Hb_000205_170 Hb_003058_050 Hb_003058_050 Hb_000345_470--Hb_003058_050 Hb_105061_010--Hb_001999_270 Hb_004413_040 Hb_004413_040 Hb_105061_010--Hb_004413_040 Hb_105061_010--Hb_000345_470
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.149884 0 0.187308 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0914493 0 0 0 0

CAGE analysis