Hb_127743_020

Information

Type transcription factor
Description TF Family: MYB
Location Contig127743: 42775-43934
Sequence    

Annotation

kegg
ID pop:POPTR_0001s47430g
description POPTRDRAFT_798297; hypothetical protein
nr
ID XP_012074162.1
description PREDICTED: myb-related protein 308 isoform X2 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A097HUU6
description MYB family protein OS=Jatropha curcas PE=4 SV=1
Gene Ontology
ID GO:0005488
description transcription repressor myb4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_127743_020 0.0 transcription factor TF Family: MYB PREDICTED: myb-related protein 308 isoform X2 [Jatropha curcas]
2 Hb_008994_010 0.2378582454 - - Pectin lyase-like superfamily protein isoform 1 [Theobroma cacao]
3 Hb_005489_030 0.3002027532 - - PREDICTED: probable protein S-acyltransferase 14 [Jatropha curcas]
4 Hb_002397_060 0.3105466646 - - conserved hypothetical protein [Ricinus communis]
5 Hb_004545_020 0.3173013596 - - PREDICTED: transmembrane protein adipocyte-associated 1-like [Populus euphratica]
6 Hb_001016_010 0.3290742733 - - conserved hypothetical protein [Ricinus communis]
7 Hb_002259_200 0.3323378574 - - conserved hypothetical protein [Ricinus communis]
8 Hb_005048_110 0.3328817844 - - -
9 Hb_002986_040 0.3347423068 - - PREDICTED: uncharacterized protein LOC105639694 [Jatropha curcas]
10 Hb_028486_060 0.3374623981 - - PREDICTED: putative germin-like protein 9-2 [Jatropha curcas]
11 Hb_000739_270 0.3408521886 - - PREDICTED: serine/threonine-protein kinase Aurora-3 [Jatropha curcas]
12 Hb_007594_100 0.3425130834 transcription factor TF Family: MIKC mads box protein, putative [Ricinus communis]
13 Hb_001507_080 0.348312516 - - PREDICTED: G2/mitotic-specific cyclin S13-7 [Jatropha curcas]
14 Hb_025214_120 0.3502417431 - - PREDICTED: glucan endo-1,3-beta-glucosidase 13 [Jatropha curcas]
15 Hb_168326_010 0.350614688 - - PREDICTED: alpha-L-fucosidase 2-like isoform X2 [Populus euphratica]
16 Hb_000138_050 0.352480892 transcription factor TF Family: HB Homeobox-leucine zipper protein HAT14, putative [Ricinus communis]
17 Hb_010712_080 0.354372181 - - hypothetical protein AALP_AA5G019400 [Arabis alpina]
18 Hb_004162_230 0.3562865333 - - PREDICTED: histone H2B [Jatropha curcas]
19 Hb_001329_190 0.3565206142 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
20 Hb_001431_110 0.3589939537 - - glycerol-3-phosphate transporter family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_127743_020 Hb_127743_020 Hb_008994_010 Hb_008994_010 Hb_127743_020--Hb_008994_010 Hb_005489_030 Hb_005489_030 Hb_127743_020--Hb_005489_030 Hb_002397_060 Hb_002397_060 Hb_127743_020--Hb_002397_060 Hb_004545_020 Hb_004545_020 Hb_127743_020--Hb_004545_020 Hb_001016_010 Hb_001016_010 Hb_127743_020--Hb_001016_010 Hb_002259_200 Hb_002259_200 Hb_127743_020--Hb_002259_200 Hb_000739_270 Hb_000739_270 Hb_008994_010--Hb_000739_270 Hb_036790_030 Hb_036790_030 Hb_008994_010--Hb_036790_030 Hb_000638_260 Hb_000638_260 Hb_008994_010--Hb_000638_260 Hb_000321_080 Hb_000321_080 Hb_008994_010--Hb_000321_080 Hb_010998_050 Hb_010998_050 Hb_008994_010--Hb_010998_050 Hb_000345_410 Hb_000345_410 Hb_008994_010--Hb_000345_410 Hb_001431_110 Hb_001431_110 Hb_005489_030--Hb_001431_110 Hb_005489_030--Hb_001016_010 Hb_001999_270 Hb_001999_270 Hb_005489_030--Hb_001999_270 Hb_006831_060 Hb_006831_060 Hb_005489_030--Hb_006831_060 Hb_005489_030--Hb_004545_020 Hb_009620_090 Hb_009620_090 Hb_002397_060--Hb_009620_090 Hb_005048_110 Hb_005048_110 Hb_002397_060--Hb_005048_110 Hb_004162_230 Hb_004162_230 Hb_002397_060--Hb_004162_230 Hb_001329_170 Hb_001329_170 Hb_002397_060--Hb_001329_170 Hb_000556_130 Hb_000556_130 Hb_002397_060--Hb_000556_130 Hb_000544_030 Hb_000544_030 Hb_002397_060--Hb_000544_030 Hb_001300_210 Hb_001300_210 Hb_004545_020--Hb_001300_210 Hb_004545_020--Hb_002259_200 Hb_003750_070 Hb_003750_070 Hb_004545_020--Hb_003750_070 Hb_001252_240 Hb_001252_240 Hb_004545_020--Hb_001252_240 Hb_004545_020--Hb_001016_010 Hb_008062_040 Hb_008062_040 Hb_004545_020--Hb_008062_040 Hb_001016_010--Hb_004162_230 Hb_001016_010--Hb_000544_030 Hb_002411_060 Hb_002411_060 Hb_001016_010--Hb_002411_060 Hb_025214_120 Hb_025214_120 Hb_001016_010--Hb_025214_120 Hb_001016_010--Hb_010998_050 Hb_030627_070 Hb_030627_070 Hb_001016_010--Hb_030627_070 Hb_021495_010 Hb_021495_010 Hb_002259_200--Hb_021495_010 Hb_002259_200--Hb_025214_120 Hb_002259_200--Hb_010998_050 Hb_010812_070 Hb_010812_070 Hb_002259_200--Hb_010812_070 Hb_002259_200--Hb_001252_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.029584 0 0.110431 0.041351 0.0237165 0.0208366
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0541854 0 0 0 0

CAGE analysis