Hb_002498_130

Information

Type -
Description -
Location Contig2498: 76130-77218
Sequence    

Annotation

kegg
ID pop:POPTR_0004s00980g
description hypothetical protein
nr
ID XP_006383893.1
description hypothetical protein POPTR_0004s00980g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U5GE18
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s00980g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002498_130 0.0 - - hypothetical protein POPTR_0004s00980g [Populus trichocarpa]
2 Hb_000781_050 0.0069243118 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
3 Hb_011356_020 0.0257656908 - - -
4 Hb_001789_170 0.0344146554 - - hypothetical protein JCGZ_08269 [Jatropha curcas]
5 Hb_000392_290 0.0778930007 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
6 Hb_024247_020 0.0952993069 - - PREDICTED: uncharacterized protein LOC105634579 [Jatropha curcas]
7 Hb_139691_010 0.1271706837 - - -
8 Hb_008035_050 0.1369516404 - - hypothetical protein POPTR_0001s08730g [Populus trichocarpa]
9 Hb_003659_020 0.1419890703 - - PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
10 Hb_000264_220 0.1861844142 - - PREDICTED: uncharacterized protein LOC105649527 [Jatropha curcas]
11 Hb_001143_260 0.2763255755 - - PREDICTED: metal transporter Nramp5-like [Populus euphratica]
12 Hb_001342_050 0.2822135497 - - -
13 Hb_000856_160 0.2900455817 - - -
14 Hb_000184_200 0.2930430626 - - -
15 Hb_152362_010 0.2979120878 - - Gamma-glutamyl-gamma-aminobutyrate hydrolase, putative [Ricinus communis]
16 Hb_000226_100 0.3080883364 - - Flavonol synthase/flavanone 3-hydroxylase, putative [Ricinus communis]
17 Hb_000038_190 0.3136835587 - - -
18 Hb_000046_150 0.3136835587 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
19 Hb_000047_120 0.3136835587 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000062_120 0.3136835587 - - hypothetical protein JCGZ_17895 [Jatropha curcas]

Gene co-expression network

sample Hb_002498_130 Hb_002498_130 Hb_000781_050 Hb_000781_050 Hb_002498_130--Hb_000781_050 Hb_011356_020 Hb_011356_020 Hb_002498_130--Hb_011356_020 Hb_001789_170 Hb_001789_170 Hb_002498_130--Hb_001789_170 Hb_000392_290 Hb_000392_290 Hb_002498_130--Hb_000392_290 Hb_024247_020 Hb_024247_020 Hb_002498_130--Hb_024247_020 Hb_139691_010 Hb_139691_010 Hb_002498_130--Hb_139691_010 Hb_000781_050--Hb_011356_020 Hb_000781_050--Hb_001789_170 Hb_000781_050--Hb_000392_290 Hb_000781_050--Hb_024247_020 Hb_000781_050--Hb_139691_010 Hb_011356_020--Hb_001789_170 Hb_011356_020--Hb_024247_020 Hb_011356_020--Hb_000392_290 Hb_011356_020--Hb_139691_010 Hb_001789_170--Hb_000392_290 Hb_001789_170--Hb_139691_010 Hb_008035_050 Hb_008035_050 Hb_001789_170--Hb_008035_050 Hb_000392_290--Hb_139691_010 Hb_000392_290--Hb_008035_050 Hb_003659_020 Hb_003659_020 Hb_000392_290--Hb_003659_020 Hb_024247_020--Hb_001789_170 Hb_000264_220 Hb_000264_220 Hb_024247_020--Hb_000264_220 Hb_024247_020--Hb_000392_290 Hb_139691_010--Hb_008035_050 Hb_139691_010--Hb_003659_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0149134 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0663968 0 0

CAGE analysis