Hb_024247_020

Information

Type -
Description -
Location Contig24247: 44253-47519
Sequence    

Annotation

kegg
ID rcu:RCOM_1111370
description hypothetical protein
nr
ID XP_012072843.1
description PREDICTED: uncharacterized protein LOC105634579 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KN22
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05976 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_024247_020 0.0 - - PREDICTED: uncharacterized protein LOC105634579 [Jatropha curcas]
2 Hb_011356_020 0.0697091209 - - -
3 Hb_000781_050 0.0884325319 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
4 Hb_002498_130 0.0952993069 - - hypothetical protein POPTR_0004s00980g [Populus trichocarpa]
5 Hb_001789_170 0.1293292255 - - hypothetical protein JCGZ_08269 [Jatropha curcas]
6 Hb_000264_220 0.1419233441 - - PREDICTED: uncharacterized protein LOC105649527 [Jatropha curcas]
7 Hb_000392_290 0.1721268542 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
8 Hb_139691_010 0.2204357887 - - -
9 Hb_008035_050 0.2300047783 - - hypothetical protein POPTR_0001s08730g [Populus trichocarpa]
10 Hb_000038_190 0.2336698739 - - -
11 Hb_000046_150 0.2336698739 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
12 Hb_000047_120 0.2336698739 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000062_120 0.2336698739 - - hypothetical protein JCGZ_17895 [Jatropha curcas]
14 Hb_000094_140 0.2336698739 - - hypothetical protein POPTR_0007s09865g [Populus trichocarpa]
15 Hb_000100_080 0.2336698739 - - -
16 Hb_000120_830 0.2336698739 - - PREDICTED: uncharacterized protein LOC105634429 [Jatropha curcas]
17 Hb_000134_060 0.2336698739 - - PREDICTED: LOW QUALITY PROTEIN: extended synaptotagmin-1-like [Jatropha curcas]
18 Hb_000173_450 0.2336698739 - - -
19 Hb_000175_170 0.2336698739 - - PREDICTED: SNF1-related protein kinase regulatory subunit gamma-like PV42a [Jatropha curcas]
20 Hb_000181_170 0.2336698739 - - hypothetical protein POPTR_0011s11750g [Populus trichocarpa]

Gene co-expression network

sample Hb_024247_020 Hb_024247_020 Hb_011356_020 Hb_011356_020 Hb_024247_020--Hb_011356_020 Hb_000781_050 Hb_000781_050 Hb_024247_020--Hb_000781_050 Hb_002498_130 Hb_002498_130 Hb_024247_020--Hb_002498_130 Hb_001789_170 Hb_001789_170 Hb_024247_020--Hb_001789_170 Hb_000264_220 Hb_000264_220 Hb_024247_020--Hb_000264_220 Hb_000392_290 Hb_000392_290 Hb_024247_020--Hb_000392_290 Hb_011356_020--Hb_000781_050 Hb_011356_020--Hb_002498_130 Hb_011356_020--Hb_001789_170 Hb_011356_020--Hb_000392_290 Hb_139691_010 Hb_139691_010 Hb_011356_020--Hb_139691_010 Hb_000781_050--Hb_002498_130 Hb_000781_050--Hb_001789_170 Hb_000781_050--Hb_000392_290 Hb_000781_050--Hb_139691_010 Hb_002498_130--Hb_001789_170 Hb_002498_130--Hb_000392_290 Hb_002498_130--Hb_139691_010 Hb_001789_170--Hb_000392_290 Hb_001789_170--Hb_139691_010 Hb_008035_050 Hb_008035_050 Hb_001789_170--Hb_008035_050 Hb_000264_220--Hb_011356_020 Hb_000264_220--Hb_000781_050 Hb_000264_220--Hb_002498_130 Hb_000264_220--Hb_001789_170 Hb_152362_010 Hb_152362_010 Hb_000264_220--Hb_152362_010 Hb_000392_290--Hb_139691_010 Hb_000392_290--Hb_008035_050 Hb_003659_020 Hb_003659_020 Hb_000392_290--Hb_003659_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0125319 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.106815 0 0

CAGE analysis