Hb_008035_050

Information

Type -
Description -
Location Contig8035: 63562-64581
Sequence    

Annotation

kegg
ID pop:POPTR_0001s08730g
description POPTRDRAFT_751384; hypothetical protein
nr
ID XP_002299564.2
description hypothetical protein POPTR_0001s08730g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9GKP2
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s08730g PE=4 SV=2
Gene Ontology
ID GO:0046872
description zinc finger protein gis2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008035_050 0.0 - - hypothetical protein POPTR_0001s08730g [Populus trichocarpa]
2 Hb_003659_020 0.0050889929 - - PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
3 Hb_139691_010 0.0098723512 - - -
4 Hb_000392_290 0.0594196746 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
5 Hb_001789_170 0.1028313741 - - hypothetical protein JCGZ_08269 [Jatropha curcas]
6 Hb_002498_130 0.1369516404 - - hypothetical protein POPTR_0004s00980g [Populus trichocarpa]
7 Hb_000781_050 0.1437876675 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
8 Hb_000856_160 0.1557982731 - - -
9 Hb_011356_020 0.1623351735 - - -
10 Hb_024247_020 0.2300047783 - - PREDICTED: uncharacterized protein LOC105634579 [Jatropha curcas]
11 Hb_000264_220 0.2912874825 - - PREDICTED: uncharacterized protein LOC105649527 [Jatropha curcas]
12 Hb_000011_090 0.2943252288 - - PREDICTED: uncharacterized protein OsI_027940-like [Jatropha curcas]
13 Hb_001342_050 0.3033536417 - - -
14 Hb_001143_260 0.3047250132 - - PREDICTED: metal transporter Nramp5-like [Populus euphratica]
15 Hb_001221_280 0.3095624747 - - -
16 Hb_002999_040 0.3106184099 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001008_140 0.3236644922 - - -
18 Hb_152362_010 0.3256352314 - - Gamma-glutamyl-gamma-aminobutyrate hydrolase, putative [Ricinus communis]
19 Hb_043623_020 0.3367581668 - - hypothetical protein JCGZ_17692 [Jatropha curcas]
20 Hb_001818_030 0.3379069611 - - hypothetical protein JCGZ_18787 [Jatropha curcas]

Gene co-expression network

sample Hb_008035_050 Hb_008035_050 Hb_003659_020 Hb_003659_020 Hb_008035_050--Hb_003659_020 Hb_139691_010 Hb_139691_010 Hb_008035_050--Hb_139691_010 Hb_000392_290 Hb_000392_290 Hb_008035_050--Hb_000392_290 Hb_001789_170 Hb_001789_170 Hb_008035_050--Hb_001789_170 Hb_002498_130 Hb_002498_130 Hb_008035_050--Hb_002498_130 Hb_000781_050 Hb_000781_050 Hb_008035_050--Hb_000781_050 Hb_003659_020--Hb_139691_010 Hb_003659_020--Hb_000392_290 Hb_003659_020--Hb_001789_170 Hb_003659_020--Hb_002498_130 Hb_003659_020--Hb_000781_050 Hb_139691_010--Hb_000392_290 Hb_139691_010--Hb_001789_170 Hb_139691_010--Hb_002498_130 Hb_139691_010--Hb_000781_050 Hb_000392_290--Hb_001789_170 Hb_000392_290--Hb_002498_130 Hb_000392_290--Hb_000781_050 Hb_001789_170--Hb_002498_130 Hb_001789_170--Hb_000781_050 Hb_011356_020 Hb_011356_020 Hb_001789_170--Hb_011356_020 Hb_002498_130--Hb_000781_050 Hb_002498_130--Hb_011356_020 Hb_024247_020 Hb_024247_020 Hb_002498_130--Hb_024247_020 Hb_000781_050--Hb_011356_020 Hb_000781_050--Hb_024247_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0341859 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0716721 0 0

CAGE analysis