Hb_098785_010

Information

Type -
Description -
Location Contig98785: 14-1193
Sequence    

Annotation

kegg
ID tcc:TCM_028061
description hypothetical protein
nr
ID XP_012072612.1
description PREDICTED: uncharacterized protein LOC105634374 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A061G986
description Uncharacterized protein OS=Theobroma cacao GN=TCM_028061 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_098785_010 0.0 - - PREDICTED: uncharacterized protein LOC105634374 [Jatropha curcas]
2 Hb_000125_220 0.2039097356 - - PREDICTED: protein STRICTOSIDINE SYNTHASE-LIKE 13 [Jatropha curcas]
3 Hb_000302_210 0.2198212597 - - conserved hypothetical protein [Ricinus communis]
4 Hb_006569_070 0.233480618 - - nucleic acid binding protein, putative [Ricinus communis]
5 Hb_000985_070 0.2529155759 - - PREDICTED: uncharacterized protein LOC105647984 [Jatropha curcas]
6 Hb_003799_020 0.2673264747 - - hypothetical protein VITISV_003261 [Vitis vinifera]
7 Hb_001221_280 0.2719199019 - - -
8 Hb_000085_390 0.2877890808 - - unnamed protein product [Vitis vinifera]
9 Hb_000925_040 0.3039962153 - - kinase, putative [Ricinus communis]
10 Hb_014068_020 0.321167849 - - PREDICTED: uncharacterized protein LOC105628343 [Jatropha curcas]
11 Hb_012754_020 0.3238240781 - - PREDICTED: uncharacterized protein LOC104229837 [Nicotiana sylvestris]
12 Hb_006472_070 0.3330898979 - - PREDICTED: uncharacterized protein LOC104445137 [Eucalyptus grandis]
13 Hb_002475_080 0.334119566 transcription factor TF Family: PHD PREDICTED: PHD finger protein MALE MEIOCYTE DEATH 1 [Jatropha curcas]
14 Hb_007012_070 0.3368328155 - - PREDICTED: probable pectinesterase 53 [Jatropha curcas]
15 Hb_007904_250 0.3458110038 - - PREDICTED: vignain-like [Jatropha curcas]
16 Hb_000010_300 0.3478285027 transcription factor TF Family: TAZ protein binding protein, putative [Ricinus communis]
17 Hb_001008_140 0.3505094659 - - -
18 Hb_043623_020 0.3535587187 - - hypothetical protein JCGZ_17692 [Jatropha curcas]
19 Hb_006472_080 0.3556110539 - - -
20 Hb_000320_260 0.3588156501 - - unnamed protein product [Vitis vinifera]

Gene co-expression network

sample Hb_098785_010 Hb_098785_010 Hb_000125_220 Hb_000125_220 Hb_098785_010--Hb_000125_220 Hb_000302_210 Hb_000302_210 Hb_098785_010--Hb_000302_210 Hb_006569_070 Hb_006569_070 Hb_098785_010--Hb_006569_070 Hb_000985_070 Hb_000985_070 Hb_098785_010--Hb_000985_070 Hb_003799_020 Hb_003799_020 Hb_098785_010--Hb_003799_020 Hb_001221_280 Hb_001221_280 Hb_098785_010--Hb_001221_280 Hb_000085_390 Hb_000085_390 Hb_000125_220--Hb_000085_390 Hb_000125_220--Hb_000985_070 Hb_000125_220--Hb_000302_210 Hb_012754_020 Hb_012754_020 Hb_000125_220--Hb_012754_020 Hb_012092_100 Hb_012092_100 Hb_000125_220--Hb_012092_100 Hb_000302_210--Hb_000985_070 Hb_000302_210--Hb_012754_020 Hb_000302_210--Hb_003799_020 Hb_000925_040 Hb_000925_040 Hb_000302_210--Hb_000925_040 Hb_006569_070--Hb_001221_280 Hb_000011_090 Hb_000011_090 Hb_006569_070--Hb_000011_090 Hb_007012_070 Hb_007012_070 Hb_006569_070--Hb_007012_070 Hb_003581_190 Hb_003581_190 Hb_006569_070--Hb_003581_190 Hb_010515_030 Hb_010515_030 Hb_006569_070--Hb_010515_030 Hb_164162_010 Hb_164162_010 Hb_000985_070--Hb_164162_010 Hb_000985_070--Hb_012754_020 Hb_014068_020 Hb_014068_020 Hb_000985_070--Hb_014068_020 Hb_003747_110 Hb_003747_110 Hb_003799_020--Hb_003747_110 Hb_003799_020--Hb_001221_280 Hb_001008_140 Hb_001008_140 Hb_003799_020--Hb_001008_140 Hb_006788_080 Hb_006788_080 Hb_003799_020--Hb_006788_080 Hb_043623_020 Hb_043623_020 Hb_001221_280--Hb_043623_020 Hb_001143_260 Hb_001143_260 Hb_001221_280--Hb_001143_260 Hb_000856_160 Hb_000856_160 Hb_001221_280--Hb_000856_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0172354 0.177429 0.0161396 0 0.0182219
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.137639 0.0598596 0

CAGE analysis