Hb_003747_110

Information

Type -
Description -
Location Contig3747: 103787-104980
Sequence    

Annotation

kegg
ID cic:CICLE_v10016123mg
description hypothetical protein
nr
ID XP_012067410.1
description PREDICTED: xyloglucan endotransglucosylase/hydrolase 1 [Jatropha curcas]
swissprot
ID Q9XIW1
description Probable xyloglucan endotransglucosylase/hydrolase protein 5 OS=Arabidopsis thaliana GN=XTH5 PE=2 SV=1
trembl
ID A0A067LCR8
description Xyloglucan endotransglucosylase/hydrolase OS=Jatropha curcas GN=JCGZ_26912 PE=3 SV=1
Gene Ontology
ID GO:0005618
description xyloglucan endo-transglycosylase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003747_110 0.0 - - PREDICTED: xyloglucan endotransglucosylase/hydrolase 1 [Jatropha curcas]
2 Hb_003799_020 0.2210951022 - - hypothetical protein VITISV_003261 [Vitis vinifera]
3 Hb_006788_080 0.2222871637 - - ammonium transporter, putative [Ricinus communis]
4 Hb_000042_370 0.2391500264 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000220_140 0.2495481978 - - palmitoyl-acyl carrier protein thioesterase [Ricinus communis]
6 Hb_000302_210 0.3048075515 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000985_070 0.3075893895 - - PREDICTED: uncharacterized protein LOC105647984 [Jatropha curcas]
8 Hb_001649_120 0.3115058374 - - -
9 Hb_000579_050 0.3351276211 - - PREDICTED: peroxidase 9 [Jatropha curcas]
10 Hb_164162_010 0.3394162291 - - PREDICTED: uncharacterized protein At1g08160-like [Jatropha curcas]
11 Hb_001060_080 0.3433966443 - - PREDICTED: uncharacterized protein LOC104219776 [Nicotiana sylvestris]
12 Hb_014068_020 0.3666706847 - - PREDICTED: uncharacterized protein LOC105628343 [Jatropha curcas]
13 Hb_012754_020 0.3752903387 - - PREDICTED: uncharacterized protein LOC104229837 [Nicotiana sylvestris]
14 Hb_003777_010 0.3770110714 - - -
15 Hb_000010_100 0.3863848446 - - hypothetical protein POPTR_0016s14440g [Populus trichocarpa]
16 Hb_001008_140 0.3900061305 - - -
17 Hb_098785_010 0.3939262345 - - PREDICTED: uncharacterized protein LOC105634374 [Jatropha curcas]
18 Hb_006478_170 0.3983426277 - - hypothetical protein POPTR_0005s23360g [Populus trichocarpa]
19 Hb_005656_030 0.4001955296 transcription factor TF Family: MYB-related r2r3-myb transcription factor, putative [Ricinus communis]
20 Hb_006472_070 0.4007908204 - - PREDICTED: uncharacterized protein LOC104445137 [Eucalyptus grandis]

Gene co-expression network

sample Hb_003747_110 Hb_003747_110 Hb_003799_020 Hb_003799_020 Hb_003747_110--Hb_003799_020 Hb_006788_080 Hb_006788_080 Hb_003747_110--Hb_006788_080 Hb_000042_370 Hb_000042_370 Hb_003747_110--Hb_000042_370 Hb_000220_140 Hb_000220_140 Hb_003747_110--Hb_000220_140 Hb_000302_210 Hb_000302_210 Hb_003747_110--Hb_000302_210 Hb_000985_070 Hb_000985_070 Hb_003747_110--Hb_000985_070 Hb_003799_020--Hb_000302_210 Hb_001221_280 Hb_001221_280 Hb_003799_020--Hb_001221_280 Hb_001008_140 Hb_001008_140 Hb_003799_020--Hb_001008_140 Hb_098785_010 Hb_098785_010 Hb_003799_020--Hb_098785_010 Hb_003799_020--Hb_006788_080 Hb_006788_080--Hb_000042_370 Hb_001060_080 Hb_001060_080 Hb_006788_080--Hb_001060_080 Hb_006907_090 Hb_006907_090 Hb_006788_080--Hb_006907_090 Hb_000061_280 Hb_000061_280 Hb_006788_080--Hb_000061_280 Hb_014068_020 Hb_014068_020 Hb_000042_370--Hb_014068_020 Hb_000042_370--Hb_003799_020 Hb_006816_520 Hb_006816_520 Hb_000042_370--Hb_006816_520 Hb_000042_370--Hb_000985_070 Hb_006478_170 Hb_006478_170 Hb_000220_140--Hb_006478_170 Hb_004296_030 Hb_004296_030 Hb_000220_140--Hb_004296_030 Hb_001649_120 Hb_001649_120 Hb_000220_140--Hb_001649_120 Hb_003777_010 Hb_003777_010 Hb_000220_140--Hb_003777_010 Hb_122911_020 Hb_122911_020 Hb_000220_140--Hb_122911_020 Hb_000302_210--Hb_000985_070 Hb_012754_020 Hb_012754_020 Hb_000302_210--Hb_012754_020 Hb_000302_210--Hb_098785_010 Hb_000125_220 Hb_000125_220 Hb_000302_210--Hb_000125_220 Hb_000925_040 Hb_000925_040 Hb_000302_210--Hb_000925_040 Hb_164162_010 Hb_164162_010 Hb_000985_070--Hb_164162_010 Hb_000985_070--Hb_012754_020 Hb_000985_070--Hb_000125_220 Hb_000985_070--Hb_014068_020 Hb_000985_070--Hb_098785_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0974973 0.0726721 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.104531 0.0236055 0

CAGE analysis