Hb_000042_370

Information

Type -
Description -
Location Contig42: 306833-307474
Sequence    

Annotation

kegg
ID rcu:RCOM_1255470
description hypothetical protein
nr
ID XP_002525770.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SIF1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1255470 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000042_370 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_006788_080 0.1918734838 - - ammonium transporter, putative [Ricinus communis]
3 Hb_003747_110 0.2391500264 - - PREDICTED: xyloglucan endotransglucosylase/hydrolase 1 [Jatropha curcas]
4 Hb_014068_020 0.2679930697 - - PREDICTED: uncharacterized protein LOC105628343 [Jatropha curcas]
5 Hb_003799_020 0.3037027814 - - hypothetical protein VITISV_003261 [Vitis vinifera]
6 Hb_006816_520 0.349144014 - - epoxide hydrolase, putative [Ricinus communis]
7 Hb_000985_070 0.3610469809 - - PREDICTED: uncharacterized protein LOC105647984 [Jatropha curcas]
8 Hb_164162_010 0.368887386 - - PREDICTED: uncharacterized protein At1g08160-like [Jatropha curcas]
9 Hb_003159_100 0.3691122737 - - UDP-glucuronosyltransferase, putative [Ricinus communis]
10 Hb_001060_080 0.3754942257 - - PREDICTED: uncharacterized protein LOC104219776 [Nicotiana sylvestris]
11 Hb_011242_020 0.3762035882 - - multidrug resistance pump, putative [Ricinus communis]
12 Hb_001008_140 0.390177252 - - -
13 Hb_000302_210 0.3953848304 - - conserved hypothetical protein [Ricinus communis]
14 Hb_005656_030 0.3972994585 transcription factor TF Family: MYB-related r2r3-myb transcription factor, putative [Ricinus communis]
15 Hb_001649_120 0.3980966944 - - -
16 Hb_000856_160 0.3998202964 - - -
17 Hb_015475_010 0.4100857269 - - hypothetical protein VITISV_034342 [Vitis vinifera]
18 Hb_000000_130 0.4106105897 - - Disease resistance-responsive family protein [Theobroma cacao]
19 Hb_006907_090 0.4130015343 - - -
20 Hb_008173_100 0.4156741256 - - Kiwellin, putative [Ricinus communis]

Gene co-expression network

sample Hb_000042_370 Hb_000042_370 Hb_006788_080 Hb_006788_080 Hb_000042_370--Hb_006788_080 Hb_003747_110 Hb_003747_110 Hb_000042_370--Hb_003747_110 Hb_014068_020 Hb_014068_020 Hb_000042_370--Hb_014068_020 Hb_003799_020 Hb_003799_020 Hb_000042_370--Hb_003799_020 Hb_006816_520 Hb_006816_520 Hb_000042_370--Hb_006816_520 Hb_000985_070 Hb_000985_070 Hb_000042_370--Hb_000985_070 Hb_006788_080--Hb_003747_110 Hb_001060_080 Hb_001060_080 Hb_006788_080--Hb_001060_080 Hb_006788_080--Hb_003799_020 Hb_006907_090 Hb_006907_090 Hb_006788_080--Hb_006907_090 Hb_000061_280 Hb_000061_280 Hb_006788_080--Hb_000061_280 Hb_003747_110--Hb_003799_020 Hb_000220_140 Hb_000220_140 Hb_003747_110--Hb_000220_140 Hb_000302_210 Hb_000302_210 Hb_003747_110--Hb_000302_210 Hb_003747_110--Hb_000985_070 Hb_014068_020--Hb_000985_070 Hb_164162_010 Hb_164162_010 Hb_014068_020--Hb_164162_010 Hb_012092_100 Hb_012092_100 Hb_014068_020--Hb_012092_100 Hb_000000_130 Hb_000000_130 Hb_014068_020--Hb_000000_130 Hb_000125_220 Hb_000125_220 Hb_014068_020--Hb_000125_220 Hb_003799_020--Hb_000302_210 Hb_001221_280 Hb_001221_280 Hb_003799_020--Hb_001221_280 Hb_001008_140 Hb_001008_140 Hb_003799_020--Hb_001008_140 Hb_098785_010 Hb_098785_010 Hb_003799_020--Hb_098785_010 Hb_011242_020 Hb_011242_020 Hb_006816_520--Hb_011242_020 Hb_062447_010 Hb_062447_010 Hb_006816_520--Hb_062447_010 Hb_002475_080 Hb_002475_080 Hb_006816_520--Hb_002475_080 Hb_006816_520--Hb_014068_020 Hb_001247_020 Hb_001247_020 Hb_006816_520--Hb_001247_020 Hb_007218_060 Hb_007218_060 Hb_006816_520--Hb_007218_060 Hb_000985_070--Hb_164162_010 Hb_012754_020 Hb_012754_020 Hb_000985_070--Hb_012754_020 Hb_000985_070--Hb_000302_210 Hb_000985_070--Hb_000125_220 Hb_000985_070--Hb_098785_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.563203 0.821807 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.619532 0 0

CAGE analysis