Hb_011242_020

Information

Type -
Description -
Location Contig11242: 7084-9452
Sequence    

Annotation

kegg
ID rcu:RCOM_0715420
description multidrug resistance pump, putative
nr
ID XP_002532702.1
description multidrug resistance pump, putative [Ricinus communis]
swissprot
ID Q9LYT3
description Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12 PE=2 SV=1
trembl
ID B9T383
description MATE efflux family protein OS=Ricinus communis GN=RCOM_0715420 PE=3 SV=1
Gene Ontology
ID GO:0005886
description protein transparent testa 12-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011242_020 0.0 - - multidrug resistance pump, putative [Ricinus communis]
2 Hb_006816_520 0.2670455173 - - epoxide hydrolase, putative [Ricinus communis]
3 Hb_132384_010 0.2912448627 - - hypothetical protein VITISV_018559 [Vitis vinifera]
4 Hb_000613_230 0.2957633769 - - conserved hypothetical protein [Ricinus communis]
5 Hb_087203_010 0.3157835506 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 68-like [Pyrus x bretschneideri]
6 Hb_003020_060 0.3235172227 - - PREDICTED: low-temperature-induced 65 kDa protein [Jatropha curcas]
7 Hb_002493_010 0.3455520923 - - -
8 Hb_001268_370 0.3591061513 - - monovalent cation:proton antiporter, putative [Ricinus communis]
9 Hb_008453_130 0.3626599836 - - hypothetical protein JCGZ_08179 [Jatropha curcas]
10 Hb_145331_010 0.3627216098 transcription factor TF Family: NAC hypothetical protein POPTR_0016s07690g [Populus trichocarpa]
11 Hb_004176_090 0.3645123202 - - Nuc-1 negative regulatory protein preg, putative [Ricinus communis]
12 Hb_001546_160 0.3647313076 - - ankyrin repeat-containing protein, putative [Ricinus communis]
13 Hb_000710_090 0.3655341202 - - PREDICTED: uncharacterized protein LOC104583249 [Brachypodium distachyon]
14 Hb_001021_020 0.3672140727 - - hypothetical protein JCGZ_13899 [Jatropha curcas]
15 Hb_000189_460 0.3730420661 - - -
16 Hb_001247_110 0.3741781849 - - Polygalacturonase precursor, putative [Ricinus communis]
17 Hb_003349_020 0.3741820098 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein At4g27190-like [Beta vulgaris subsp. vulgaris]
18 Hb_000042_370 0.3762035882 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000340_380 0.3813754714 - - PREDICTED: receptor-like cytosolic serine/threonine-protein kinase RBK2 [Jatropha curcas]
20 Hb_002977_020 0.3828238756 - - PREDICTED: glycine-rich cell wall structural protein 1.8-like [Nelumbo nucifera]

Gene co-expression network

sample Hb_011242_020 Hb_011242_020 Hb_006816_520 Hb_006816_520 Hb_011242_020--Hb_006816_520 Hb_132384_010 Hb_132384_010 Hb_011242_020--Hb_132384_010 Hb_000613_230 Hb_000613_230 Hb_011242_020--Hb_000613_230 Hb_087203_010 Hb_087203_010 Hb_011242_020--Hb_087203_010 Hb_003020_060 Hb_003020_060 Hb_011242_020--Hb_003020_060 Hb_002493_010 Hb_002493_010 Hb_011242_020--Hb_002493_010 Hb_062447_010 Hb_062447_010 Hb_006816_520--Hb_062447_010 Hb_002475_080 Hb_002475_080 Hb_006816_520--Hb_002475_080 Hb_014068_020 Hb_014068_020 Hb_006816_520--Hb_014068_020 Hb_001247_020 Hb_001247_020 Hb_006816_520--Hb_001247_020 Hb_007218_060 Hb_007218_060 Hb_006816_520--Hb_007218_060 Hb_132384_010--Hb_087203_010 Hb_033623_040 Hb_033623_040 Hb_132384_010--Hb_033623_040 Hb_004195_220 Hb_004195_220 Hb_132384_010--Hb_004195_220 Hb_132384_010--Hb_002493_010 Hb_151320_010 Hb_151320_010 Hb_132384_010--Hb_151320_010 Hb_010366_010 Hb_010366_010 Hb_000613_230--Hb_010366_010 Hb_000613_230--Hb_003020_060 Hb_001546_160 Hb_001546_160 Hb_000613_230--Hb_001546_160 Hb_001019_070 Hb_001019_070 Hb_000613_230--Hb_001019_070 Hb_021443_030 Hb_021443_030 Hb_000613_230--Hb_021443_030 Hb_012034_010 Hb_012034_010 Hb_087203_010--Hb_012034_010 Hb_008453_130 Hb_008453_130 Hb_087203_010--Hb_008453_130 Hb_087203_010--Hb_002493_010 Hb_087203_010--Hb_033623_040 Hb_000710_090 Hb_000710_090 Hb_003020_060--Hb_000710_090 Hb_006487_040 Hb_006487_040 Hb_003020_060--Hb_006487_040 Hb_000567_400 Hb_000567_400 Hb_003020_060--Hb_000567_400 Hb_003020_060--Hb_001546_160 Hb_003992_050 Hb_003992_050 Hb_003020_060--Hb_003992_050 Hb_002493_010--Hb_033623_040 Hb_002122_020 Hb_002122_020 Hb_002493_010--Hb_002122_020 Hb_001300_250 Hb_001300_250 Hb_002493_010--Hb_001300_250 Hb_138585_020 Hb_138585_020 Hb_002493_010--Hb_138585_020 Hb_088410_010 Hb_088410_010 Hb_002493_010--Hb_088410_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0425988 0.0914771 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0572383 0 0.063687

CAGE analysis