Hb_132384_010

Information

Type -
Description -
Location Contig132384: 60-464
Sequence    

Annotation

kegg
ID vvi:104879890
description uncharacterized LOC104879890
nr
ID CAN72927.1
description hypothetical protein VITISV_018559 [Vitis vinifera]
swissprot
ID -
description -
trembl
ID A5C126
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_018559 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_132384_010 0.0 - - hypothetical protein VITISV_018559 [Vitis vinifera]
2 Hb_087203_010 0.231498506 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 68-like [Pyrus x bretschneideri]
3 Hb_033623_040 0.2403100609 - - JHL22C18.10 [Jatropha curcas]
4 Hb_004195_220 0.2436248416 - - hypothetical protein PRUPE_ppa005288mg [Prunus persica]
5 Hb_002493_010 0.2681988929 - - -
6 Hb_151320_010 0.2706077552 - - -
7 Hb_011242_020 0.2912448627 - - multidrug resistance pump, putative [Ricinus communis]
8 Hb_170156_010 0.3047735944 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
9 Hb_053079_010 0.3057985647 - - polyprotein [Citrus endogenous pararetrovirus]
10 Hb_013080_010 0.3150181 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
11 Hb_002122_020 0.3188621381 - - PREDICTED: putative disease resistance protein RGA4, partial [Jatropha curcas]
12 Hb_000172_130 0.3290120481 - - hypothetical protein JCGZ_24076 [Jatropha curcas]
13 Hb_028998_010 0.3420447198 - - -
14 Hb_001369_430 0.3420454355 - - PREDICTED: uncharacterized protein LOC105648869 [Jatropha curcas]
15 Hb_000110_110 0.3420461234 - - hypothetical protein B456_002G103400 [Gossypium raimondii]
16 Hb_089844_010 0.3420470147 - - -
17 Hb_026405_010 0.3420477935 - - PREDICTED: uncharacterized protein LOC104107896 [Nicotiana tomentosiformis]
18 Hb_009577_010 0.3420479785 - - -
19 Hb_001168_090 0.3420489591 - - PREDICTED: uncharacterized protein LOC104246050 [Nicotiana sylvestris]
20 Hb_181107_010 0.3420504446 - - hypothetical protein, partial [Pseudomonas tolaasii]

Gene co-expression network

sample Hb_132384_010 Hb_132384_010 Hb_087203_010 Hb_087203_010 Hb_132384_010--Hb_087203_010 Hb_033623_040 Hb_033623_040 Hb_132384_010--Hb_033623_040 Hb_004195_220 Hb_004195_220 Hb_132384_010--Hb_004195_220 Hb_002493_010 Hb_002493_010 Hb_132384_010--Hb_002493_010 Hb_151320_010 Hb_151320_010 Hb_132384_010--Hb_151320_010 Hb_011242_020 Hb_011242_020 Hb_132384_010--Hb_011242_020 Hb_012034_010 Hb_012034_010 Hb_087203_010--Hb_012034_010 Hb_087203_010--Hb_011242_020 Hb_008453_130 Hb_008453_130 Hb_087203_010--Hb_008453_130 Hb_087203_010--Hb_002493_010 Hb_087203_010--Hb_033623_040 Hb_033623_040--Hb_002493_010 Hb_002122_020 Hb_002122_020 Hb_033623_040--Hb_002122_020 Hb_017184_010 Hb_017184_010 Hb_033623_040--Hb_017184_010 Hb_001952_080 Hb_001952_080 Hb_033623_040--Hb_001952_080 Hb_004989_010 Hb_004989_010 Hb_033623_040--Hb_004989_010 Hb_039316_010 Hb_039316_010 Hb_033623_040--Hb_039316_010 Hb_004195_220--Hb_151320_010 Hb_000172_130 Hb_000172_130 Hb_004195_220--Hb_000172_130 Hb_053079_010 Hb_053079_010 Hb_004195_220--Hb_053079_010 Hb_170156_010 Hb_170156_010 Hb_004195_220--Hb_170156_010 Hb_007790_040 Hb_007790_040 Hb_004195_220--Hb_007790_040 Hb_002493_010--Hb_002122_020 Hb_001300_250 Hb_001300_250 Hb_002493_010--Hb_001300_250 Hb_138585_020 Hb_138585_020 Hb_002493_010--Hb_138585_020 Hb_088410_010 Hb_088410_010 Hb_002493_010--Hb_088410_010 Hb_013420_120 Hb_013420_120 Hb_151320_010--Hb_013420_120 Hb_000987_110 Hb_000987_110 Hb_151320_010--Hb_000987_110 Hb_141425_010 Hb_141425_010 Hb_151320_010--Hb_141425_010 Hb_123396_010 Hb_123396_010 Hb_151320_010--Hb_123396_010 Hb_005742_010 Hb_005742_010 Hb_151320_010--Hb_005742_010 Hb_006816_520 Hb_006816_520 Hb_011242_020--Hb_006816_520 Hb_000613_230 Hb_000613_230 Hb_011242_020--Hb_000613_230 Hb_003020_060 Hb_003020_060 Hb_011242_020--Hb_003020_060 Hb_011242_020--Hb_002493_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0719587 0.0693735 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.245576 0 0.269772

CAGE analysis