Hb_012034_010

Information

Type -
Description -
Location Contig12034: 3262-3736
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012034_010 0.0 - - -
2 Hb_139576_010 0.2455181932 - - PREDICTED: uncharacterized protein LOC105795953 [Gossypium raimondii]
3 Hb_166124_010 0.2520747288 - - PREDICTED: uncharacterized protein LOC104094989 [Nicotiana tomentosiformis]
4 Hb_000159_020 0.2802980055 - - PREDICTED: UDP-glycosyltransferase 74F2-like [Jatropha curcas]
5 Hb_062273_010 0.2910762521 - - ATP synthase F0 subunit 9 [Chara vulgaris]
6 Hb_087203_010 0.2911808695 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 68-like [Pyrus x bretschneideri]
7 Hb_034455_010 0.2930957994 - - UDP-glucosyltransferase, putative [Ricinus communis]
8 Hb_001671_090 0.2961466839 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
9 Hb_034168_070 0.3025813665 - - ATP synthase F1 subunit 1 (mitochondrion) [Hevea brasiliensis]
10 Hb_053998_020 0.3065180185 - - -
11 Hb_072212_020 0.3092627664 - - hypothetical protein B456_001G162300 [Gossypium raimondii]
12 Hb_013420_120 0.311616259 - - -
13 Hb_003523_040 0.3154359075 - - F15O4.13 [Arabidopsis thaliana]
14 Hb_053079_010 0.3171775373 - - polyprotein [Citrus endogenous pararetrovirus]
15 Hb_013420_010 0.3185767646 - - conserved hypothetical protein [Ricinus communis]
16 Hb_042463_020 0.3243463467 - - conserved hypothetical protein [Ricinus communis]
17 Hb_170559_010 0.3254276851 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
18 Hb_001523_030 0.3265984203 - - protein binding protein, putative [Ricinus communis]
19 Hb_004643_010 0.3267750503 - - cytochrome B, putative [Ricinus communis]
20 Hb_003333_040 0.3302865512 - - ankyrin repeat-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_012034_010 Hb_012034_010 Hb_139576_010 Hb_139576_010 Hb_012034_010--Hb_139576_010 Hb_166124_010 Hb_166124_010 Hb_012034_010--Hb_166124_010 Hb_000159_020 Hb_000159_020 Hb_012034_010--Hb_000159_020 Hb_062273_010 Hb_062273_010 Hb_012034_010--Hb_062273_010 Hb_087203_010 Hb_087203_010 Hb_012034_010--Hb_087203_010 Hb_034455_010 Hb_034455_010 Hb_012034_010--Hb_034455_010 Hb_139576_010--Hb_166124_010 Hb_006113_010 Hb_006113_010 Hb_139576_010--Hb_006113_010 Hb_089419_010 Hb_089419_010 Hb_139576_010--Hb_089419_010 Hb_003523_040 Hb_003523_040 Hb_139576_010--Hb_003523_040 Hb_000987_110 Hb_000987_110 Hb_139576_010--Hb_000987_110 Hb_141425_010 Hb_141425_010 Hb_166124_010--Hb_141425_010 Hb_166124_010--Hb_000987_110 Hb_123396_010 Hb_123396_010 Hb_166124_010--Hb_123396_010 Hb_009268_030 Hb_009268_030 Hb_166124_010--Hb_009268_030 Hb_170973_010 Hb_170973_010 Hb_166124_010--Hb_170973_010 Hb_000159_020--Hb_034455_010 Hb_171685_030 Hb_171685_030 Hb_000159_020--Hb_171685_030 Hb_072212_020 Hb_072212_020 Hb_000159_020--Hb_072212_020 Hb_102602_030 Hb_102602_030 Hb_000159_020--Hb_102602_030 Hb_171685_040 Hb_171685_040 Hb_000159_020--Hb_171685_040 Hb_189099_020 Hb_189099_020 Hb_000159_020--Hb_189099_020 Hb_062273_010--Hb_072212_020 Hb_042463_020 Hb_042463_020 Hb_062273_010--Hb_042463_020 Hb_034168_070 Hb_034168_070 Hb_062273_010--Hb_034168_070 Hb_062192_030 Hb_062192_030 Hb_062273_010--Hb_062192_030 Hb_104735_020 Hb_104735_020 Hb_062273_010--Hb_104735_020 Hb_062273_010--Hb_189099_020 Hb_132384_010 Hb_132384_010 Hb_087203_010--Hb_132384_010 Hb_011242_020 Hb_011242_020 Hb_087203_010--Hb_011242_020 Hb_008453_130 Hb_008453_130 Hb_087203_010--Hb_008453_130 Hb_002493_010 Hb_002493_010 Hb_087203_010--Hb_002493_010 Hb_033623_040 Hb_033623_040 Hb_087203_010--Hb_033623_040 Hb_034455_010--Hb_189099_020 Hb_034455_010--Hb_062192_030 Hb_003125_100 Hb_003125_100 Hb_034455_010--Hb_003125_100 Hb_034455_010--Hb_171685_030 Hb_001083_040 Hb_001083_040 Hb_034455_010--Hb_001083_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.289388 0.0976731 0.0873949 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.31206 0 1.3651

CAGE analysis