Hb_166124_010

Information

Type -
Description -
Location Contig166124: 30-1277
Sequence    

Annotation

kegg
ID tcc:TCM_045983
description Gag protease polyprotein-like protein
nr
ID XP_009599307.1
description PREDICTED: uncharacterized protein LOC104094989 [Nicotiana tomentosiformis]
swissprot
ID -
description -
trembl
ID S1S3V9
description Gag protease polyprotein-like protein OS=Theobroma cacao GN=TCM_045983 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_166124_010 0.0 - - PREDICTED: uncharacterized protein LOC104094989 [Nicotiana tomentosiformis]
2 Hb_139576_010 0.1421708221 - - PREDICTED: uncharacterized protein LOC105795953 [Gossypium raimondii]
3 Hb_141425_010 0.209488112 - - hypothetical protein POPTR_0001s43680g, partial [Populus trichocarpa]
4 Hb_000987_110 0.209495239 - - PREDICTED: uncharacterized protein LOC104902780 [Beta vulgaris subsp. vulgaris]
5 Hb_123396_010 0.2095902804 - - hypothetical protein AMTR_s00510p00011440 [Amborella trichopoda]
6 Hb_009268_030 0.2222777628 - - ribosomal protein S7 [Piper cenocladum]
7 Hb_170973_010 0.2223157393 - - PREDICTED: uncharacterized protein LOC105644346 [Jatropha curcas]
8 Hb_004124_010 0.2420205416 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
9 Hb_004078_030 0.2511503015 - - Putative polyprotein, identical [Solanum demissum]
10 Hb_004019_060 0.2511617929 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
11 Hb_008601_020 0.2511650707 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
12 Hb_004989_010 0.2511924344 - - retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza sativa Japonica Group]
13 Hb_017184_010 0.2514995897 - - PREDICTED: uncharacterized protein LOC105778857 [Gossypium raimondii]
14 Hb_001952_080 0.2515561156 - - PREDICTED: uncharacterized protein LOC105042236 isoform X2 [Elaeis guineensis]
15 Hb_039316_010 0.2515840495 - - PREDICTED: uncharacterized protein LOC105771917 [Gossypium raimondii]
16 Hb_113614_010 0.2515996739 - - hypothetical protein VITISV_001308 [Vitis vinifera]
17 Hb_000029_430 0.2516347357 - - PREDICTED: adenylate isopentenyltransferase 5, chloroplastic-like [Jatropha curcas]
18 Hb_181107_010 0.2517944908 - - hypothetical protein, partial [Pseudomonas tolaasii]
19 Hb_001168_090 0.2519525807 - - PREDICTED: uncharacterized protein LOC104246050 [Nicotiana sylvestris]
20 Hb_009577_010 0.252072865 - - -

Gene co-expression network

sample Hb_166124_010 Hb_166124_010 Hb_139576_010 Hb_139576_010 Hb_166124_010--Hb_139576_010 Hb_141425_010 Hb_141425_010 Hb_166124_010--Hb_141425_010 Hb_000987_110 Hb_000987_110 Hb_166124_010--Hb_000987_110 Hb_123396_010 Hb_123396_010 Hb_166124_010--Hb_123396_010 Hb_009268_030 Hb_009268_030 Hb_166124_010--Hb_009268_030 Hb_170973_010 Hb_170973_010 Hb_166124_010--Hb_170973_010 Hb_012034_010 Hb_012034_010 Hb_139576_010--Hb_012034_010 Hb_006113_010 Hb_006113_010 Hb_139576_010--Hb_006113_010 Hb_089419_010 Hb_089419_010 Hb_139576_010--Hb_089419_010 Hb_003523_040 Hb_003523_040 Hb_139576_010--Hb_003523_040 Hb_139576_010--Hb_000987_110 Hb_141425_010--Hb_000987_110 Hb_141425_010--Hb_123396_010 Hb_141425_010--Hb_009268_030 Hb_141425_010--Hb_170973_010 Hb_004124_010 Hb_004124_010 Hb_141425_010--Hb_004124_010 Hb_004078_030 Hb_004078_030 Hb_141425_010--Hb_004078_030 Hb_000987_110--Hb_123396_010 Hb_000987_110--Hb_009268_030 Hb_000987_110--Hb_170973_010 Hb_000987_110--Hb_004124_010 Hb_000987_110--Hb_004078_030 Hb_123396_010--Hb_009268_030 Hb_123396_010--Hb_170973_010 Hb_123396_010--Hb_004124_010 Hb_123396_010--Hb_004078_030 Hb_009268_030--Hb_170973_010 Hb_009268_030--Hb_004124_010 Hb_001124_170 Hb_001124_170 Hb_009268_030--Hb_001124_170 Hb_170973_010--Hb_004124_010 Hb_170973_010--Hb_001124_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0187035 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0624029 0 0.138818

CAGE analysis