Hb_006113_010

Information

Type -
Description -
Location Contig6113: 1972-10263
Sequence    

Annotation

kegg
ID tcc:TCM_045650
description DNA/RNA polymerases superfamily protein
nr
ID CAN80324.1
description hypothetical protein VITISV_015014 [Vitis vinifera]
swissprot
ID -
description -
trembl
ID A5AQU5
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_015014 PE=4 SV=1
Gene Ontology
ID GO:0005634
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006113_010 0.0 - - hypothetical protein VITISV_015014 [Vitis vinifera]
2 Hb_133047_020 0.2703766639 - - lysophosphatidic acid acyltransferase, putative [Ricinus communis]
3 Hb_139576_010 0.2909694593 - - PREDICTED: uncharacterized protein LOC105795953 [Gossypium raimondii]
4 Hb_032531_010 0.3181613163 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
5 Hb_000101_150 0.3211508565 - - -
6 Hb_000940_190 0.3234583912 - - PREDICTED: uncharacterized protein LOC104878039 [Vitis vinifera]
7 Hb_099723_010 0.3243485012 - - hypothetical protein JCGZ_15340 [Jatropha curcas]
8 Hb_050334_010 0.3263187142 - - -
9 Hb_065943_010 0.3284145485 - - -
10 Hb_166124_010 0.3311718364 - - PREDICTED: uncharacterized protein LOC104094989 [Nicotiana tomentosiformis]
11 Hb_006157_050 0.3313491389 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
12 Hb_001282_030 0.331976636 - - hypothetical protein JCGZ_01613 [Jatropha curcas]
13 Hb_012295_020 0.3389600158 - - PREDICTED: uncharacterized protein LOC104223093 [Nicotiana sylvestris]
14 Hb_012071_010 0.3419495203 - - PREDICTED: uncharacterized protein LOC105629655 [Jatropha curcas]
15 Hb_001519_210 0.3448855842 - - hypothetical protein B456_003G032500 [Gossypium raimondii]
16 Hb_002599_040 0.3451986366 - - PREDICTED: uncharacterized protein LOC104105697 [Nicotiana tomentosiformis]
17 Hb_001304_120 0.3454263903 transcription factor TF Family: WRKY WRKY protein [Hevea brasiliensis]
18 Hb_002869_070 0.3519097637 - - -
19 Hb_004212_040 0.3536492806 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
20 Hb_000276_050 0.3589015187 - - -

Gene co-expression network

sample Hb_006113_010 Hb_006113_010 Hb_133047_020 Hb_133047_020 Hb_006113_010--Hb_133047_020 Hb_139576_010 Hb_139576_010 Hb_006113_010--Hb_139576_010 Hb_032531_010 Hb_032531_010 Hb_006113_010--Hb_032531_010 Hb_000101_150 Hb_000101_150 Hb_006113_010--Hb_000101_150 Hb_000940_190 Hb_000940_190 Hb_006113_010--Hb_000940_190 Hb_099723_010 Hb_099723_010 Hb_006113_010--Hb_099723_010 Hb_088410_010 Hb_088410_010 Hb_133047_020--Hb_088410_010 Hb_002473_140 Hb_002473_140 Hb_133047_020--Hb_002473_140 Hb_002047_020 Hb_002047_020 Hb_133047_020--Hb_002047_020 Hb_001671_090 Hb_001671_090 Hb_133047_020--Hb_001671_090 Hb_159938_010 Hb_159938_010 Hb_133047_020--Hb_159938_010 Hb_166124_010 Hb_166124_010 Hb_139576_010--Hb_166124_010 Hb_012034_010 Hb_012034_010 Hb_139576_010--Hb_012034_010 Hb_089419_010 Hb_089419_010 Hb_139576_010--Hb_089419_010 Hb_003523_040 Hb_003523_040 Hb_139576_010--Hb_003523_040 Hb_000987_110 Hb_000987_110 Hb_139576_010--Hb_000987_110 Hb_032531_010--Hb_000940_190 Hb_032531_010--Hb_099723_010 Hb_050334_010 Hb_050334_010 Hb_032531_010--Hb_050334_010 Hb_065943_010 Hb_065943_010 Hb_032531_010--Hb_065943_010 Hb_006157_050 Hb_006157_050 Hb_032531_010--Hb_006157_050 Hb_012295_020 Hb_012295_020 Hb_032531_010--Hb_012295_020 Hb_008730_010 Hb_008730_010 Hb_000101_150--Hb_008730_010 Hb_170156_010 Hb_170156_010 Hb_000101_150--Hb_170156_010 Hb_076795_010 Hb_076795_010 Hb_000101_150--Hb_076795_010 Hb_043708_010 Hb_043708_010 Hb_000101_150--Hb_043708_010 Hb_000031_350 Hb_000031_350 Hb_000101_150--Hb_000031_350 Hb_022132_020 Hb_022132_020 Hb_000101_150--Hb_022132_020 Hb_000940_190--Hb_099723_010 Hb_000940_190--Hb_065943_010 Hb_000940_190--Hb_006157_050 Hb_000940_190--Hb_050334_010 Hb_002869_070 Hb_002869_070 Hb_000940_190--Hb_002869_070 Hb_099723_010--Hb_065943_010 Hb_099723_010--Hb_006157_050 Hb_099723_010--Hb_050334_010 Hb_099723_010--Hb_002869_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0152597 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0259844 0.0108196 0.0289737

CAGE analysis