Hb_139576_010

Information

Type -
Description -
Location Contig139576: 116-517
Sequence    

Annotation

kegg
ID tcc:TCM_035798
description hypothetical protein
nr
ID XP_012481053.1
description PREDICTED: uncharacterized protein LOC105795953 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A061FIG0
description Uncharacterized protein OS=Theobroma cacao GN=TCM_035798 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_139576_010 0.0 - - PREDICTED: uncharacterized protein LOC105795953 [Gossypium raimondii]
2 Hb_166124_010 0.1421708221 - - PREDICTED: uncharacterized protein LOC104094989 [Nicotiana tomentosiformis]
3 Hb_012034_010 0.2455181932 - - -
4 Hb_006113_010 0.2909694593 - - hypothetical protein VITISV_015014 [Vitis vinifera]
5 Hb_089419_010 0.3054208686 - - PREDICTED: uncharacterized protein LOC105795045 [Gossypium raimondii]
6 Hb_003523_040 0.3185917186 - - F15O4.13 [Arabidopsis thaliana]
7 Hb_000987_110 0.3293373047 - - PREDICTED: uncharacterized protein LOC104902780 [Beta vulgaris subsp. vulgaris]
8 Hb_141425_010 0.329348712 - - hypothetical protein POPTR_0001s43680g, partial [Populus trichocarpa]
9 Hb_123396_010 0.3293524559 - - hypothetical protein AMTR_s00510p00011440 [Amborella trichopoda]
10 Hb_009268_030 0.3376877423 - - ribosomal protein S7 [Piper cenocladum]
11 Hb_170973_010 0.3377120073 - - PREDICTED: uncharacterized protein LOC105644346 [Jatropha curcas]
12 Hb_000101_150 0.3395454049 - - -
13 Hb_004124_010 0.3493349449 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
14 Hb_002599_040 0.3507532744 - - PREDICTED: uncharacterized protein LOC104105697 [Nicotiana tomentosiformis]
15 Hb_004078_030 0.3542801398 - - Putative polyprotein, identical [Solanum demissum]
16 Hb_004019_060 0.35428754 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
17 Hb_008601_020 0.354289651 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
18 Hb_004989_010 0.3543072738 - - retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza sativa Japonica Group]
19 Hb_017184_010 0.3545051702 - - PREDICTED: uncharacterized protein LOC105778857 [Gossypium raimondii]
20 Hb_001952_080 0.3545416055 - - PREDICTED: uncharacterized protein LOC105042236 isoform X2 [Elaeis guineensis]

Gene co-expression network

sample Hb_139576_010 Hb_139576_010 Hb_166124_010 Hb_166124_010 Hb_139576_010--Hb_166124_010 Hb_012034_010 Hb_012034_010 Hb_139576_010--Hb_012034_010 Hb_006113_010 Hb_006113_010 Hb_139576_010--Hb_006113_010 Hb_089419_010 Hb_089419_010 Hb_139576_010--Hb_089419_010 Hb_003523_040 Hb_003523_040 Hb_139576_010--Hb_003523_040 Hb_000987_110 Hb_000987_110 Hb_139576_010--Hb_000987_110 Hb_141425_010 Hb_141425_010 Hb_166124_010--Hb_141425_010 Hb_166124_010--Hb_000987_110 Hb_123396_010 Hb_123396_010 Hb_166124_010--Hb_123396_010 Hb_009268_030 Hb_009268_030 Hb_166124_010--Hb_009268_030 Hb_170973_010 Hb_170973_010 Hb_166124_010--Hb_170973_010 Hb_012034_010--Hb_166124_010 Hb_000159_020 Hb_000159_020 Hb_012034_010--Hb_000159_020 Hb_062273_010 Hb_062273_010 Hb_012034_010--Hb_062273_010 Hb_087203_010 Hb_087203_010 Hb_012034_010--Hb_087203_010 Hb_034455_010 Hb_034455_010 Hb_012034_010--Hb_034455_010 Hb_133047_020 Hb_133047_020 Hb_006113_010--Hb_133047_020 Hb_032531_010 Hb_032531_010 Hb_006113_010--Hb_032531_010 Hb_000101_150 Hb_000101_150 Hb_006113_010--Hb_000101_150 Hb_000940_190 Hb_000940_190 Hb_006113_010--Hb_000940_190 Hb_099723_010 Hb_099723_010 Hb_006113_010--Hb_099723_010 Hb_000948_090 Hb_000948_090 Hb_089419_010--Hb_000948_090 Hb_000165_150 Hb_000165_150 Hb_089419_010--Hb_000165_150 Hb_001952_040 Hb_001952_040 Hb_089419_010--Hb_001952_040 Hb_003002_030 Hb_003002_030 Hb_089419_010--Hb_003002_030 Hb_089419_010--Hb_166124_010 Hb_122556_010 Hb_122556_010 Hb_003523_040--Hb_122556_010 Hb_043708_010 Hb_043708_010 Hb_003523_040--Hb_043708_010 Hb_094900_010 Hb_094900_010 Hb_003523_040--Hb_094900_010 Hb_133820_010 Hb_133820_010 Hb_003523_040--Hb_133820_010 Hb_159036_010 Hb_159036_010 Hb_003523_040--Hb_159036_010 Hb_123046_010 Hb_123046_010 Hb_003523_040--Hb_123046_010 Hb_000987_110--Hb_141425_010 Hb_000987_110--Hb_123396_010 Hb_000987_110--Hb_009268_030 Hb_000987_110--Hb_170973_010 Hb_004124_010 Hb_004124_010 Hb_000987_110--Hb_004124_010 Hb_004078_030 Hb_004078_030 Hb_000987_110--Hb_004078_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.235813 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.294351 0 0.644585

CAGE analysis