Hb_089419_010

Information

Type -
Description -
Location Contig89419: 1608-2195
Sequence    

Annotation

kegg
ID pop:POPTR_0001s43820g
description hypothetical protein
nr
ID XP_012479950.1
description PREDICTED: uncharacterized protein LOC105795045 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A0B0NVE7
description Uncharacterized protein OS=Gossypium arboreum GN=F383_16817 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_089419_010 0.0 - - PREDICTED: uncharacterized protein LOC105795045 [Gossypium raimondii]
2 Hb_000948_090 0.1922724907 - - carbonic anhydrase, putative [Ricinus communis]
3 Hb_000165_150 0.2769666907 - - PREDICTED: pistil-specific extensin-like protein [Jatropha curcas]
4 Hb_001952_040 0.2975934664 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
5 Hb_139576_010 0.3054208686 - - PREDICTED: uncharacterized protein LOC105795953 [Gossypium raimondii]
6 Hb_003002_030 0.3360885043 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
7 Hb_166124_010 0.3641137604 - - PREDICTED: uncharacterized protein LOC104094989 [Nicotiana tomentosiformis]
8 Hb_000101_150 0.3649559596 - - -
9 Hb_009467_050 0.366455901 - - interferon-induced GTP-binding protein mx, putative [Ricinus communis]
10 Hb_006113_010 0.3741972226 - - hypothetical protein VITISV_015014 [Vitis vinifera]
11 Hb_003209_160 0.38080633 - - PREDICTED: putative SNAP25 homologous protein SNAP30 [Populus euphratica]
12 Hb_007545_020 0.3854717605 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Nicotiana tomentosiformis]
13 Hb_167183_010 0.396184478 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
14 Hb_001106_050 0.397922787 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
15 Hb_010589_140 0.4015716159 - - PREDICTED: pentatricopeptide repeat-containing protein At1g08070-like [Fragaria vesca subsp. vesca]
16 Hb_003711_030 0.4077437779 - - PREDICTED: uncharacterized protein LOC102621950 [Citrus sinensis]
17 Hb_087426_010 0.4093181349 - - PREDICTED: uncharacterized protein LOC105803348 [Gossypium raimondii]
18 Hb_001523_030 0.40976333 - - protein binding protein, putative [Ricinus communis]
19 Hb_011478_010 0.4100363884 - - -
20 Hb_000154_010 0.4127320286 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]

Gene co-expression network

sample Hb_089419_010 Hb_089419_010 Hb_000948_090 Hb_000948_090 Hb_089419_010--Hb_000948_090 Hb_000165_150 Hb_000165_150 Hb_089419_010--Hb_000165_150 Hb_001952_040 Hb_001952_040 Hb_089419_010--Hb_001952_040 Hb_139576_010 Hb_139576_010 Hb_089419_010--Hb_139576_010 Hb_003002_030 Hb_003002_030 Hb_089419_010--Hb_003002_030 Hb_166124_010 Hb_166124_010 Hb_089419_010--Hb_166124_010 Hb_001106_050 Hb_001106_050 Hb_000948_090--Hb_001106_050 Hb_000948_090--Hb_001952_040 Hb_000948_090--Hb_000165_150 Hb_000948_090--Hb_139576_010 Hb_000154_010 Hb_000154_010 Hb_000948_090--Hb_000154_010 Hb_003711_030 Hb_003711_030 Hb_000165_150--Hb_003711_030 Hb_062482_010 Hb_062482_010 Hb_000165_150--Hb_062482_010 Hb_000172_130 Hb_000172_130 Hb_000165_150--Hb_000172_130 Hb_011478_010 Hb_011478_010 Hb_000165_150--Hb_011478_010 Hb_167183_010 Hb_167183_010 Hb_000165_150--Hb_167183_010 Hb_079067_010 Hb_079067_010 Hb_001952_040--Hb_079067_010 Hb_086077_020 Hb_086077_020 Hb_001952_040--Hb_086077_020 Hb_004440_080 Hb_004440_080 Hb_001952_040--Hb_004440_080 Hb_000012_460 Hb_000012_460 Hb_001952_040--Hb_000012_460 Hb_139576_010--Hb_166124_010 Hb_012034_010 Hb_012034_010 Hb_139576_010--Hb_012034_010 Hb_006113_010 Hb_006113_010 Hb_139576_010--Hb_006113_010 Hb_003523_040 Hb_003523_040 Hb_139576_010--Hb_003523_040 Hb_000987_110 Hb_000987_110 Hb_139576_010--Hb_000987_110 Hb_054127_050 Hb_054127_050 Hb_003002_030--Hb_054127_050 Hb_003002_030--Hb_001106_050 Hb_001006_240 Hb_001006_240 Hb_003002_030--Hb_001006_240 Hb_001545_210 Hb_001545_210 Hb_003002_030--Hb_001545_210 Hb_025311_020 Hb_025311_020 Hb_003002_030--Hb_025311_020 Hb_001943_020 Hb_001943_020 Hb_003002_030--Hb_001943_020 Hb_141425_010 Hb_141425_010 Hb_166124_010--Hb_141425_010 Hb_166124_010--Hb_000987_110 Hb_123396_010 Hb_123396_010 Hb_166124_010--Hb_123396_010 Hb_009268_030 Hb_009268_030 Hb_166124_010--Hb_009268_030 Hb_170973_010 Hb_170973_010 Hb_166124_010--Hb_170973_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.113744 0 0 0 0 0.0679622
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.142611 0 0.157758

CAGE analysis