Hb_079067_010

Information

Type -
Description -
Location Contig79067: 14-1230
Sequence    

Annotation

kegg
ID mdm:103442917
description protein SPT2 homolog
nr
ID XP_008379926.1
description PREDICTED: protein SPT2 homolog [Malus domestica]
swissprot
ID -
description -
trembl
ID M1DD81
description Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400036702 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_079067_010 0.0 - - PREDICTED: protein SPT2 homolog [Malus domestica]
2 Hb_001952_040 0.281998839 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
3 Hb_001579_240 0.2983113944 - - galactinol synthase [Manihot esculenta]
4 Hb_000001_080 0.3115094166 - - -
5 Hb_005375_020 0.33133676 - - PREDICTED: endoribonuclease Dicer homolog 1-like [Nicotiana sylvestris]
6 Hb_003780_070 0.3433586684 - - PREDICTED: pirin-like protein [Jatropha curcas]
7 Hb_000630_040 0.3449821458 transcription factor TF Family: bZIP PREDICTED: protein ABSCISIC ACID-INSENSITIVE 5 [Jatropha curcas]
8 Hb_002843_070 0.3550832405 - - unknown [Lotus japonicus]
9 Hb_007831_020 0.3707995651 - - conserved hypothetical protein [Ricinus communis]
10 Hb_002843_080 0.3737643281 - - SAUR family protein [Theobroma cacao]
11 Hb_005739_010 0.3744317028 - - hypothetical protein JCGZ_04016 [Jatropha curcas]
12 Hb_000529_220 0.3754643327 - - conserved hypothetical protein [Ricinus communis]
13 Hb_025964_050 0.3762206494 - - PREDICTED: neural Wiskott-Aldrich syndrome protein [Jatropha curcas]
14 Hb_165739_010 0.3770470471 - - DNA binding protein, putative [Ricinus communis]
15 Hb_002054_010 0.3770985949 - - PREDICTED: heptahelical transmembrane protein 1 [Jatropha curcas]
16 Hb_086077_020 0.3776763323 - - hypothetical protein PHAVU_001G054900g [Phaseolus vulgaris]
17 Hb_112064_020 0.3779955724 - - PREDICTED: cytochrome b561 and DOMON domain-containing protein At5g47530-like [Jatropha curcas]
18 Hb_036988_010 0.3783021388 - - hypothetical protein JCGZ_25496 [Jatropha curcas]
19 Hb_000940_140 0.380707445 - - PREDICTED: uncharacterized protein LOC105629655 [Jatropha curcas]
20 Hb_000154_010 0.3820102921 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]

Gene co-expression network

sample Hb_079067_010 Hb_079067_010 Hb_001952_040 Hb_001952_040 Hb_079067_010--Hb_001952_040 Hb_001579_240 Hb_001579_240 Hb_079067_010--Hb_001579_240 Hb_000001_080 Hb_000001_080 Hb_079067_010--Hb_000001_080 Hb_005375_020 Hb_005375_020 Hb_079067_010--Hb_005375_020 Hb_003780_070 Hb_003780_070 Hb_079067_010--Hb_003780_070 Hb_000630_040 Hb_000630_040 Hb_079067_010--Hb_000630_040 Hb_086077_020 Hb_086077_020 Hb_001952_040--Hb_086077_020 Hb_089419_010 Hb_089419_010 Hb_001952_040--Hb_089419_010 Hb_004440_080 Hb_004440_080 Hb_001952_040--Hb_004440_080 Hb_000012_460 Hb_000012_460 Hb_001952_040--Hb_000012_460 Hb_000948_090 Hb_000948_090 Hb_001952_040--Hb_000948_090 Hb_004117_350 Hb_004117_350 Hb_001579_240--Hb_004117_350 Hb_007520_010 Hb_007520_010 Hb_001579_240--Hb_007520_010 Hb_050953_010 Hb_050953_010 Hb_001579_240--Hb_050953_010 Hb_002843_070 Hb_002843_070 Hb_001579_240--Hb_002843_070 Hb_002471_100 Hb_002471_100 Hb_001579_240--Hb_002471_100 Hb_007831_020 Hb_007831_020 Hb_001579_240--Hb_007831_020 Hb_004346_030 Hb_004346_030 Hb_000001_080--Hb_004346_030 Hb_004162_260 Hb_004162_260 Hb_000001_080--Hb_004162_260 Hb_091194_010 Hb_091194_010 Hb_000001_080--Hb_091194_010 Hb_004672_030 Hb_004672_030 Hb_000001_080--Hb_004672_030 Hb_000001_080--Hb_007831_020 Hb_002843_080 Hb_002843_080 Hb_000001_080--Hb_002843_080 Hb_001587_070 Hb_001587_070 Hb_005375_020--Hb_001587_070 Hb_000157_120 Hb_000157_120 Hb_005375_020--Hb_000157_120 Hb_000329_180 Hb_000329_180 Hb_005375_020--Hb_000329_180 Hb_000496_060 Hb_000496_060 Hb_005375_020--Hb_000496_060 Hb_000069_600 Hb_000069_600 Hb_005375_020--Hb_000069_600 Hb_001153_060 Hb_001153_060 Hb_005375_020--Hb_001153_060 Hb_011316_090 Hb_011316_090 Hb_003780_070--Hb_011316_090 Hb_002276_020 Hb_002276_020 Hb_003780_070--Hb_002276_020 Hb_000631_080 Hb_000631_080 Hb_003780_070--Hb_000631_080 Hb_002024_010 Hb_002024_010 Hb_003780_070--Hb_002024_010 Hb_015198_020 Hb_015198_020 Hb_003780_070--Hb_015198_020 Hb_000335_030 Hb_000335_030 Hb_003780_070--Hb_000335_030 Hb_002054_010 Hb_002054_010 Hb_000630_040--Hb_002054_010 Hb_000630_070 Hb_000630_070 Hb_000630_040--Hb_000630_070 Hb_005739_010 Hb_005739_010 Hb_000630_040--Hb_005739_010 Hb_101832_010 Hb_101832_010 Hb_000630_040--Hb_101832_010 Hb_000316_050 Hb_000316_050 Hb_000630_040--Hb_000316_050 Hb_002900_140 Hb_002900_140 Hb_000630_040--Hb_002900_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0444034 0.0164292 0 0.0166259 0 0.0636139
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.135491 0 0.0657655 0 0.0731322

CAGE analysis