Hb_003780_070

Information

Type -
Description -
Location Contig3780: 79949-82592
Sequence    

Annotation

kegg
ID pop:POPTR_0014s14780g
description POPTRDRAFT_572931; pirin-like family protein
nr
ID XP_012066253.1
description PREDICTED: pirin-like protein [Jatropha curcas]
swissprot
ID Q9SEE4
description Pirin-like protein OS=Solanum lycopersicum PE=2 SV=1
trembl
ID A0A067L6M0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23820 PE=3 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38489: 80901-82215
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003780_070 0.0 - - PREDICTED: pirin-like protein [Jatropha curcas]
2 Hb_011316_090 0.1729026263 - - OSJNBa0004L19.22 [Oryza sativa Japonica Group]
3 Hb_002276_020 0.1758038423 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH49 isoform X1 [Jatropha curcas]
4 Hb_000631_080 0.1803983243 transcription factor TF Family: C2H2 PREDICTED: dnaJ homolog subfamily C member 21 [Jatropha curcas]
5 Hb_002024_010 0.1843102192 - - hypothetical protein B456_003G0564002, partial [Gossypium raimondii]
6 Hb_015198_020 0.1857481608 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000335_030 0.1863097646 - - PREDICTED: pentatricopeptide repeat-containing protein At2g17033 [Jatropha curcas]
8 Hb_004204_140 0.1867703506 transcription factor TF Family: C2H2 hypothetical protein RCOM_1470470 [Ricinus communis]
9 Hb_002903_090 0.1878127402 - - sugar transporter, putative [Ricinus communis]
10 Hb_001951_180 0.1905371241 - - PREDICTED: carboxyl-terminal-processing peptidase 1, chloroplastic isoform X2 [Jatropha curcas]
11 Hb_004156_050 0.1923830358 transcription factor TF Family: TCP PREDICTED: transcription factor TCP23-like [Populus euphratica]
12 Hb_000236_070 0.1933507158 - - conserved hypothetical protein [Ricinus communis]
13 Hb_095595_010 0.1938491554 - - PREDICTED: caffeoylshikimate esterase-like [Jatropha curcas]
14 Hb_002422_070 0.1941045448 - - PREDICTED: putative protein TPRXL [Malus domestica]
15 Hb_001322_190 0.1941715742 - - PREDICTED: uncharacterized protein LOC105632381 [Jatropha curcas]
16 Hb_008053_050 0.1955523493 - - PREDICTED: uncharacterized protein LOC105642980 isoform X2 [Jatropha curcas]
17 Hb_001898_160 0.195600526 - - hypothetical protein POPTR_0004s23390g [Populus trichocarpa]
18 Hb_062135_030 0.1971395052 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase 1-deoxyxylulose-5-phosphate synthase, putative [Ricinus communis]
19 Hb_003170_040 0.198382317 - - PREDICTED: microfibrillar-associated protein 1-like [Prunus mume]
20 Hb_007545_030 0.1987244617 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_003780_070 Hb_003780_070 Hb_011316_090 Hb_011316_090 Hb_003780_070--Hb_011316_090 Hb_002276_020 Hb_002276_020 Hb_003780_070--Hb_002276_020 Hb_000631_080 Hb_000631_080 Hb_003780_070--Hb_000631_080 Hb_002024_010 Hb_002024_010 Hb_003780_070--Hb_002024_010 Hb_015198_020 Hb_015198_020 Hb_003780_070--Hb_015198_020 Hb_000335_030 Hb_000335_030 Hb_003780_070--Hb_000335_030 Hb_011316_090--Hb_002276_020 Hb_000665_130 Hb_000665_130 Hb_011316_090--Hb_000665_130 Hb_001951_180 Hb_001951_180 Hb_011316_090--Hb_001951_180 Hb_000261_060 Hb_000261_060 Hb_011316_090--Hb_000261_060 Hb_001369_750 Hb_001369_750 Hb_011316_090--Hb_001369_750 Hb_000281_090 Hb_000281_090 Hb_011316_090--Hb_000281_090 Hb_002276_020--Hb_000665_130 Hb_002276_020--Hb_001369_750 Hb_002276_020--Hb_001951_180 Hb_002276_020--Hb_000261_060 Hb_010883_040 Hb_010883_040 Hb_002276_020--Hb_010883_040 Hb_000574_390 Hb_000574_390 Hb_000631_080--Hb_000574_390 Hb_086639_040 Hb_086639_040 Hb_000631_080--Hb_086639_040 Hb_002685_210 Hb_002685_210 Hb_000631_080--Hb_002685_210 Hb_000861_020 Hb_000861_020 Hb_000631_080--Hb_000861_020 Hb_015941_020 Hb_015941_020 Hb_000631_080--Hb_015941_020 Hb_004225_050 Hb_004225_050 Hb_000631_080--Hb_004225_050 Hb_012286_010 Hb_012286_010 Hb_002024_010--Hb_012286_010 Hb_004994_380 Hb_004994_380 Hb_002024_010--Hb_004994_380 Hb_002084_020 Hb_002084_020 Hb_002024_010--Hb_002084_020 Hb_010710_070 Hb_010710_070 Hb_002024_010--Hb_010710_070 Hb_012799_030 Hb_012799_030 Hb_002024_010--Hb_012799_030 Hb_001322_140 Hb_001322_140 Hb_002024_010--Hb_001322_140 Hb_015198_020--Hb_000574_390 Hb_000047_030 Hb_000047_030 Hb_015198_020--Hb_000047_030 Hb_011242_040 Hb_011242_040 Hb_015198_020--Hb_011242_040 Hb_013405_030 Hb_013405_030 Hb_015198_020--Hb_013405_030 Hb_003142_020 Hb_003142_020 Hb_015198_020--Hb_003142_020 Hb_001898_160 Hb_001898_160 Hb_015198_020--Hb_001898_160 Hb_004191_020 Hb_004191_020 Hb_000335_030--Hb_004191_020 Hb_001341_070 Hb_001341_070 Hb_000335_030--Hb_001341_070 Hb_029510_050 Hb_029510_050 Hb_000335_030--Hb_029510_050 Hb_000335_030--Hb_010883_040 Hb_006478_020 Hb_006478_020 Hb_000335_030--Hb_006478_020 Hb_000676_250 Hb_000676_250 Hb_000335_030--Hb_000676_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.1379 2.84158 1.59375 7.1184 4.50813 11.6356
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.9047 5.36939 15.0271 6.71881 20.2261

CAGE analysis