Hb_005375_020

Information

Type -
Description -
Location Contig5375: 33737-34534
Sequence    

Annotation

kegg
ID dosa:Os03t0121901-00
description Os03g0121901; Similar to Endoribonuclease Dicer homolog 1.
nr
ID XP_009797761.1
description PREDICTED: endoribonuclease Dicer homolog 1-like [Nicotiana sylvestris]
swissprot
ID Q4WVE3
description Dicer-like protein 1 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=dcl1 PE=3 SV=3
trembl
ID A5AES1
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_002668 PE=4 SV=1
Gene Ontology
ID GO:0003723
description endoribonuclease dicer homolog 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47610: 33127-33860
cDNA
(Sanger)
(ID:Location)		 007_L14.ab1: 33127-33860

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005375_020 0.0 - - PREDICTED: endoribonuclease Dicer homolog 1-like [Nicotiana sylvestris]
2 Hb_001587_070 0.1414900577 desease resistance Gene Name: NB-ARC Nbs-lrr resistance protein, putative [Theobroma cacao]
3 Hb_000157_120 0.164861677 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
4 Hb_000329_180 0.1748301403 - - Auxin-induced protein X10A, putative [Ricinus communis]
5 Hb_000496_060 0.1797927209 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH3 [Jatropha curcas]
6 Hb_000069_600 0.1804480035 - - PREDICTED: mitochondrial adenine nucleotide transporter ADNT1 [Jatropha curcas]
7 Hb_001153_060 0.1833529856 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000539_030 0.1838043029 rubber biosynthesis Gene Name: Mevalonate diphosphate decarboxylase diphosphomevelonate decarboxylase [Hevea brasiliensis]
9 Hb_000258_330 0.1869314255 - - Ran GTPase binding protein, putative [Ricinus communis]
10 Hb_000123_170 0.1891275784 - - Rab3 [Hevea brasiliensis]
11 Hb_000347_030 0.1913937882 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL2 [Jatropha curcas]
12 Hb_011457_090 0.1944699517 - - PREDICTED: methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial [Jatropha curcas]
13 Hb_003732_010 0.1948902579 - - hypothetical protein CHLNCDRAFT_58243 [Chlorella variabilis]
14 Hb_000260_810 0.1949506788 - - -
15 Hb_022181_020 0.196654933 - - PREDICTED: D-tyrosyl-tRNA(Tyr) deacylase isoform X1 [Jatropha curcas]
16 Hb_117134_010 0.1967249984 - - PREDICTED: 14 kDa zinc-binding protein isoform X1 [Jatropha curcas]
17 Hb_000230_270 0.1970309433 - - PREDICTED: peptide methionine sulfoxide reductase B5-like [Jatropha curcas]
18 Hb_003849_100 0.1972328721 - - PREDICTED: putative transcription elongation factor SPT5 homolog 1 [Populus euphratica]
19 Hb_000189_140 0.1977921891 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
20 Hb_001080_280 0.1987356356 - - PREDICTED: uncharacterized protein LOC105649981 [Jatropha curcas]

Gene co-expression network

sample Hb_005375_020 Hb_005375_020 Hb_001587_070 Hb_001587_070 Hb_005375_020--Hb_001587_070 Hb_000157_120 Hb_000157_120 Hb_005375_020--Hb_000157_120 Hb_000329_180 Hb_000329_180 Hb_005375_020--Hb_000329_180 Hb_000496_060 Hb_000496_060 Hb_005375_020--Hb_000496_060 Hb_000069_600 Hb_000069_600 Hb_005375_020--Hb_000069_600 Hb_001153_060 Hb_001153_060 Hb_005375_020--Hb_001153_060 Hb_000539_030 Hb_000539_030 Hb_001587_070--Hb_000539_030 Hb_162275_030 Hb_162275_030 Hb_001587_070--Hb_162275_030 Hb_003849_100 Hb_003849_100 Hb_001587_070--Hb_003849_100 Hb_006472_050 Hb_006472_050 Hb_001587_070--Hb_006472_050 Hb_003732_010 Hb_003732_010 Hb_001587_070--Hb_003732_010 Hb_003687_150 Hb_003687_150 Hb_001587_070--Hb_003687_150 Hb_100777_010 Hb_100777_010 Hb_000157_120--Hb_100777_010 Hb_023226_010 Hb_023226_010 Hb_000157_120--Hb_023226_010 Hb_117134_010 Hb_117134_010 Hb_000157_120--Hb_117134_010 Hb_000087_020 Hb_000087_020 Hb_000157_120--Hb_000087_020 Hb_000157_120--Hb_000496_060 Hb_084849_020 Hb_084849_020 Hb_000157_120--Hb_084849_020 Hb_000125_030 Hb_000125_030 Hb_000329_180--Hb_000125_030 Hb_000260_210 Hb_000260_210 Hb_000329_180--Hb_000260_210 Hb_003207_170 Hb_003207_170 Hb_000329_180--Hb_003207_170 Hb_000061_300 Hb_000061_300 Hb_000329_180--Hb_000061_300 Hb_061802_010 Hb_061802_010 Hb_000329_180--Hb_061802_010 Hb_001575_020 Hb_001575_020 Hb_000329_180--Hb_001575_020 Hb_000025_120 Hb_000025_120 Hb_000496_060--Hb_000025_120 Hb_005432_030 Hb_005432_030 Hb_000496_060--Hb_005432_030 Hb_003175_040 Hb_003175_040 Hb_000496_060--Hb_003175_040 Hb_000496_060--Hb_117134_010 Hb_014720_080 Hb_014720_080 Hb_000496_060--Hb_014720_080 Hb_001833_110 Hb_001833_110 Hb_000496_060--Hb_001833_110 Hb_001983_020 Hb_001983_020 Hb_000069_600--Hb_001983_020 Hb_022181_020 Hb_022181_020 Hb_000069_600--Hb_022181_020 Hb_035273_030 Hb_035273_030 Hb_000069_600--Hb_035273_030 Hb_000958_110 Hb_000958_110 Hb_000069_600--Hb_000958_110 Hb_003050_220 Hb_003050_220 Hb_000069_600--Hb_003050_220 Hb_089995_010 Hb_089995_010 Hb_000069_600--Hb_089995_010 Hb_001153_060--Hb_003207_170 Hb_011457_090 Hb_011457_090 Hb_001153_060--Hb_011457_090 Hb_007926_060 Hb_007926_060 Hb_001153_060--Hb_007926_060 Hb_001153_060--Hb_006472_050 Hb_180301_010 Hb_180301_010 Hb_001153_060--Hb_180301_010 Hb_000898_050 Hb_000898_050 Hb_001153_060--Hb_000898_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.738011 0.432968 0.275325 0.450413 0.0363573 1.04043
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.06165 0.634122 1.6201 0.431482 0.552111

CAGE analysis