Hb_001579_240

Information

Type -
Description -
Location Contig1579: 167896-169941
Sequence    

Annotation

kegg
ID rcu:RCOM_0528010
description hypothetical protein
nr
ID AIE11288.1
description galactinol synthase [Manihot esculenta]
swissprot
ID Q9XGN4
description Galactinol synthase 1 OS=Ajuga reptans GN=GOLS1 PE=1 SV=1
trembl
ID A0A068J1P9
description Hexosyltransferase OS=Manihot esculenta GN=GolS3 PE=2 SV=1
Gene Ontology
ID GO:0047216
description galactinol synthase 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13837: 167935-169922
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001579_240 0.0 - - galactinol synthase [Manihot esculenta]
2 Hb_004117_350 0.2126961524 transcription factor TF Family: OFP PREDICTED: transcription repressor OFP4 [Jatropha curcas]
3 Hb_007520_010 0.2138041524 - - PREDICTED: uncharacterized protein LOC105640383 [Jatropha curcas]
4 Hb_050953_010 0.2343987392 - - PREDICTED: uncharacterized protein LOC105779031 [Gossypium raimondii]
5 Hb_002843_070 0.2551180343 - - unknown [Lotus japonicus]
6 Hb_002471_100 0.2558704175 - - PREDICTED: anthranilate synthase beta subunit 1, chloroplastic-like [Jatropha curcas]
7 Hb_007831_020 0.259878977 - - conserved hypothetical protein [Ricinus communis]
8 Hb_003734_110 0.262331192 - - PREDICTED: cytochrome c-type biogenesis ccda-like chloroplastic protein [Jatropha curcas]
9 Hb_000001_080 0.2627972906 - - -
10 Hb_004108_090 0.2668057679 - - PREDICTED: uncharacterized protein LOC105650231 [Jatropha curcas]
11 Hb_000429_100 0.2711989921 - - hypothetical protein POPTR_0006s05430g [Populus trichocarpa]
12 Hb_000169_140 0.2728736455 - - PREDICTED: uncharacterized protein LOC105643397 [Jatropha curcas]
13 Hb_001435_020 0.2730127546 - - hypothetical protein JCGZ_22466 [Jatropha curcas]
14 Hb_003780_070 0.2737181129 - - PREDICTED: pirin-like protein [Jatropha curcas]
15 Hb_002054_010 0.2766360496 - - PREDICTED: heptahelical transmembrane protein 1 [Jatropha curcas]
16 Hb_003336_030 0.2782117481 - - transcription factor, putative [Ricinus communis]
17 Hb_000630_040 0.2794234815 transcription factor TF Family: bZIP PREDICTED: protein ABSCISIC ACID-INSENSITIVE 5 [Jatropha curcas]
18 Hb_000575_030 0.2795843796 - - unnamed protein product [Vitis vinifera]
19 Hb_004162_260 0.2827462295 transcription factor TF Family: C2H2 conserved hypothetical protein [Ricinus communis]
20 Hb_005344_030 0.2828229023 - - PREDICTED: UDP-glycosyltransferase 74F2-like [Jatropha curcas]

Gene co-expression network

sample Hb_001579_240 Hb_001579_240 Hb_004117_350 Hb_004117_350 Hb_001579_240--Hb_004117_350 Hb_007520_010 Hb_007520_010 Hb_001579_240--Hb_007520_010 Hb_050953_010 Hb_050953_010 Hb_001579_240--Hb_050953_010 Hb_002843_070 Hb_002843_070 Hb_001579_240--Hb_002843_070 Hb_002471_100 Hb_002471_100 Hb_001579_240--Hb_002471_100 Hb_007831_020 Hb_007831_020 Hb_001579_240--Hb_007831_020 Hb_183086_050 Hb_183086_050 Hb_004117_350--Hb_183086_050 Hb_012146_030 Hb_012146_030 Hb_004117_350--Hb_012146_030 Hb_114310_110 Hb_114310_110 Hb_004117_350--Hb_114310_110 Hb_003780_070 Hb_003780_070 Hb_004117_350--Hb_003780_070 Hb_006649_070 Hb_006649_070 Hb_004117_350--Hb_006649_070 Hb_000258_100 Hb_000258_100 Hb_007520_010--Hb_000258_100 Hb_000169_140 Hb_000169_140 Hb_007520_010--Hb_000169_140 Hb_003336_030 Hb_003336_030 Hb_007520_010--Hb_003336_030 Hb_004108_090 Hb_004108_090 Hb_007520_010--Hb_004108_090 Hb_004162_260 Hb_004162_260 Hb_007520_010--Hb_004162_260 Hb_010582_010 Hb_010582_010 Hb_007520_010--Hb_010582_010 Hb_000390_110 Hb_000390_110 Hb_050953_010--Hb_000390_110 Hb_000622_240 Hb_000622_240 Hb_050953_010--Hb_000622_240 Hb_005344_030 Hb_005344_030 Hb_050953_010--Hb_005344_030 Hb_001435_020 Hb_001435_020 Hb_050953_010--Hb_001435_020 Hb_000429_100 Hb_000429_100 Hb_050953_010--Hb_000429_100 Hb_071947_010 Hb_071947_010 Hb_002843_070--Hb_071947_010 Hb_008948_100 Hb_008948_100 Hb_002843_070--Hb_008948_100 Hb_004738_010 Hb_004738_010 Hb_002843_070--Hb_004738_010 Hb_002027_400 Hb_002027_400 Hb_002843_070--Hb_002027_400 Hb_001863_480 Hb_001863_480 Hb_002843_070--Hb_001863_480 Hb_000539_030 Hb_000539_030 Hb_002843_070--Hb_000539_030 Hb_002301_290 Hb_002301_290 Hb_002471_100--Hb_002301_290 Hb_001373_150 Hb_001373_150 Hb_002471_100--Hb_001373_150 Hb_000072_070 Hb_000072_070 Hb_002471_100--Hb_000072_070 Hb_035273_030 Hb_035273_030 Hb_002471_100--Hb_035273_030 Hb_011316_100 Hb_011316_100 Hb_002471_100--Hb_011316_100 Hb_005892_060 Hb_005892_060 Hb_002471_100--Hb_005892_060 Hb_004346_030 Hb_004346_030 Hb_007831_020--Hb_004346_030 Hb_002284_310 Hb_002284_310 Hb_007831_020--Hb_002284_310 Hb_001014_170 Hb_001014_170 Hb_007831_020--Hb_001014_170 Hb_003687_150 Hb_003687_150 Hb_007831_020--Hb_003687_150 Hb_000335_030 Hb_000335_030 Hb_007831_020--Hb_000335_030 Hb_034013_020 Hb_034013_020 Hb_007831_020--Hb_034013_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
397.957 77.4296 48.7316 99.6876 72.3998 136.876
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1131.92 164.363 239.102 22.9255 735.627

CAGE analysis