Hb_004117_350

Information

Type transcription factor
Description TF Family: OFP
Location Contig4117: 243307-244968
Sequence    

Annotation

kegg
ID tcc:TCM_019730
description AF4/FMR2 family member 1
nr
ID XP_012089698.1
description PREDICTED: transcription repressor OFP4 [Jatropha curcas]
swissprot
ID F4HNU8
description Transcription repressor OFP4 OS=Arabidopsis thaliana GN=OFP4 PE=1 SV=1
trembl
ID A0A067JTC6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00366 PE=4 SV=1
Gene Ontology
ID GO:0003677
description ovate family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40787: 243625-244033
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004117_350 0.0 transcription factor TF Family: OFP PREDICTED: transcription repressor OFP4 [Jatropha curcas]
2 Hb_183086_050 0.2085494585 - - PREDICTED: metal-nicotianamine transporter YSL3 [Jatropha curcas]
3 Hb_012146_030 0.2099615691 - - -
4 Hb_001579_240 0.2126961524 - - galactinol synthase [Manihot esculenta]
5 Hb_114310_110 0.2145881569 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
6 Hb_003780_070 0.2157963335 - - PREDICTED: pirin-like protein [Jatropha curcas]
7 Hb_006649_070 0.2188608701 - - unknown [Lotus japonicus]
8 Hb_000371_100 0.2206909004 rubber biosynthesis Gene Name: Geranyl geranyl diphosphate synthase RecName: Full=Geranylgeranyl pyrophosphate synthase, chloroplastic; Short=GGPP synthase; Short=GGPS; AltName: Full=(2E,6E)-farnesyl diphosphate synthase; AltName: Full=Dimethylallyltranstransferase; AltName: Full=Farnesyl diphosphate synthase; AltName: Full=Farnesyltranstransferase; AltName: Full=Geranyltranstransferase; Flags: Precursor [Hevea brasiliensis]
9 Hb_011316_090 0.2209734657 - - OSJNBa0004L19.22 [Oryza sativa Japonica Group]
10 Hb_001951_180 0.2218541321 - - PREDICTED: carboxyl-terminal-processing peptidase 1, chloroplastic isoform X2 [Jatropha curcas]
11 Hb_095595_010 0.2257228145 - - PREDICTED: caffeoylshikimate esterase-like [Jatropha curcas]
12 Hb_010883_040 0.2260588164 - - PREDICTED: phosphatidylinositol 4-phosphate 5-kinase 1 [Jatropha curcas]
13 Hb_001227_090 0.2271069462 - - peroxiredoxin, putative [Ricinus communis]
14 Hb_000796_170 0.2293428611 - - PREDICTED: long chain acyl-CoA synthetase 1 [Jatropha curcas]
15 Hb_000603_230 0.2351712388 - - copper-transporting atpase paa1, putative [Ricinus communis]
16 Hb_000135_030 0.2368554577 - - PREDICTED: uncharacterized protein LOC105634729 isoform X1 [Jatropha curcas]
17 Hb_000608_170 0.2374119191 - - F23N19.4 [Arabidopsis thaliana]
18 Hb_004346_030 0.2377583329 - - sucrose phosphate phosphatase, putative [Ricinus communis]
19 Hb_000575_030 0.2379103717 - - unnamed protein product [Vitis vinifera]
20 Hb_002276_020 0.2393721513 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH49 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_004117_350 Hb_004117_350 Hb_183086_050 Hb_183086_050 Hb_004117_350--Hb_183086_050 Hb_012146_030 Hb_012146_030 Hb_004117_350--Hb_012146_030 Hb_001579_240 Hb_001579_240 Hb_004117_350--Hb_001579_240 Hb_114310_110 Hb_114310_110 Hb_004117_350--Hb_114310_110 Hb_003780_070 Hb_003780_070 Hb_004117_350--Hb_003780_070 Hb_006649_070 Hb_006649_070 Hb_004117_350--Hb_006649_070 Hb_000300_660 Hb_000300_660 Hb_183086_050--Hb_000300_660 Hb_006154_020 Hb_006154_020 Hb_183086_050--Hb_006154_020 Hb_003687_250 Hb_003687_250 Hb_183086_050--Hb_003687_250 Hb_015934_120 Hb_015934_120 Hb_183086_050--Hb_015934_120 Hb_000613_070 Hb_000613_070 Hb_183086_050--Hb_000613_070 Hb_000186_050 Hb_000186_050 Hb_183086_050--Hb_000186_050 Hb_002217_260 Hb_002217_260 Hb_012146_030--Hb_002217_260 Hb_001951_180 Hb_001951_180 Hb_012146_030--Hb_001951_180 Hb_000087_140 Hb_000087_140 Hb_012146_030--Hb_000087_140 Hb_000702_080 Hb_000702_080 Hb_012146_030--Hb_000702_080 Hb_006054_050 Hb_006054_050 Hb_012146_030--Hb_006054_050 Hb_001080_090 Hb_001080_090 Hb_012146_030--Hb_001080_090 Hb_007520_010 Hb_007520_010 Hb_001579_240--Hb_007520_010 Hb_050953_010 Hb_050953_010 Hb_001579_240--Hb_050953_010 Hb_002843_070 Hb_002843_070 Hb_001579_240--Hb_002843_070 Hb_002471_100 Hb_002471_100 Hb_001579_240--Hb_002471_100 Hb_007831_020 Hb_007831_020 Hb_001579_240--Hb_007831_020 Hb_000135_030 Hb_000135_030 Hb_114310_110--Hb_000135_030 Hb_000608_170 Hb_000608_170 Hb_114310_110--Hb_000608_170 Hb_004398_030 Hb_004398_030 Hb_114310_110--Hb_004398_030 Hb_000928_010 Hb_000928_010 Hb_114310_110--Hb_000928_010 Hb_000371_100 Hb_000371_100 Hb_114310_110--Hb_000371_100 Hb_185447_010 Hb_185447_010 Hb_114310_110--Hb_185447_010 Hb_011316_090 Hb_011316_090 Hb_003780_070--Hb_011316_090 Hb_002276_020 Hb_002276_020 Hb_003780_070--Hb_002276_020 Hb_000631_080 Hb_000631_080 Hb_003780_070--Hb_000631_080 Hb_002024_010 Hb_002024_010 Hb_003780_070--Hb_002024_010 Hb_015198_020 Hb_015198_020 Hb_003780_070--Hb_015198_020 Hb_000335_030 Hb_000335_030 Hb_003780_070--Hb_000335_030 Hb_018202_030 Hb_018202_030 Hb_006649_070--Hb_018202_030 Hb_006649_070--Hb_012146_030 Hb_006132_070 Hb_006132_070 Hb_006649_070--Hb_006132_070 Hb_029610_010 Hb_029610_010 Hb_006649_070--Hb_029610_010 Hb_006649_070--Hb_006054_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.295 2.99971 3.73518 3.6915 1.50065 2.64893
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.3554 3.48913 5.02531 1.76015 20.1829

CAGE analysis