Hb_029610_010

Information

Type -
Description -
Location Contig29610: 45689-47647
Sequence    

Annotation

kegg
ID rcu:RCOM_0561350
description o-methyltransferase, putative (EC:2.1.1.68)
nr
ID AFD61598.1
description caffeic acid 3-O-methyltransferase [Hevea brasiliensis]
swissprot
ID Q9FQY8
description Caffeic acid 3-O-methyltransferase OS=Capsicum annuum GN=COMT PE=2 SV=2
trembl
ID H9BMN2
description Caffeic acid 3-O-methyltransferase OS=Hevea brasiliensis GN=COMT PE=2 SV=1
Gene Ontology
ID GO:0008171
description caffeic acid 3-o-methyltransferase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30986: 45692-47631
cDNA
(Sanger)
(ID:Location)		 016_P15.ab1: 46483-47631

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_029610_010 0.0 - - caffeic acid 3-O-methyltransferase [Hevea brasiliensis]
2 Hb_114310_110 0.169305153 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
3 Hb_000928_010 0.1900274678 - - Cell division protein ftsZ, putative [Ricinus communis]
4 Hb_000608_170 0.1925032508 - - F23N19.4 [Arabidopsis thaliana]
5 Hb_003349_040 0.1965887283 - - PREDICTED: uncharacterized protein LOC105628285 [Jatropha curcas]
6 Hb_009178_070 0.1972243569 - - PREDICTED: probable plastid-lipid-associated protein 8, chloroplastic [Jatropha curcas]
7 Hb_012545_060 0.2027009684 - - PREDICTED: uncharacterized protein LOC103986927 [Musa acuminata subsp. malaccensis]
8 Hb_000609_100 0.2030145214 - - Thylakoid lumenal 16.5 kDa protein, chloroplast precursor, putative [Ricinus communis]
9 Hb_000690_060 0.2031740333 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1-like [Populus euphratica]
10 Hb_011310_140 0.2058093581 - - hypothetical protein JCGZ_07173 [Jatropha curcas]
11 Hb_002027_410 0.2062611423 - - PREDICTED: protease Do-like 2, chloroplastic [Jatropha curcas]
12 Hb_004846_050 0.2065253614 - - PREDICTED: uncharacterized protein ycf23-like [Jatropha curcas]
13 Hb_001109_180 0.2080289605 - - PREDICTED: protein BREVIS RADIX-like [Populus euphratica]
14 Hb_012305_100 0.2081910328 rubber biosynthesis Gene Name: Dihydrolipoamide dehydrogenase PREDICTED: dihydrolipoyl dehydrogenase 2, chloroplastic-like [Jatropha curcas]
15 Hb_000984_270 0.2084387616 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000059_270 0.2085143457 - - superoxide dismutase [Fe], chloroplastic [Jatropha curcas]
17 Hb_167103_010 0.2106798838 - - PREDICTED: transcriptional activator DEMETER isoform X1 [Jatropha curcas]
18 Hb_005038_030 0.2115579413 - - PREDICTED: uncharacterized protein LOC105636682 isoform X2 [Jatropha curcas]
19 Hb_163950_070 0.2115715104 - - arginine/serine-rich splicing factor, putative [Ricinus communis]
20 Hb_088500_010 0.2125046312 - - PREDICTED: haloacid dehalogenase-like hydrolase domain-containing protein At4g39970 [Jatropha curcas]

Gene co-expression network

sample Hb_029610_010 Hb_029610_010 Hb_114310_110 Hb_114310_110 Hb_029610_010--Hb_114310_110 Hb_000928_010 Hb_000928_010 Hb_029610_010--Hb_000928_010 Hb_000608_170 Hb_000608_170 Hb_029610_010--Hb_000608_170 Hb_003349_040 Hb_003349_040 Hb_029610_010--Hb_003349_040 Hb_009178_070 Hb_009178_070 Hb_029610_010--Hb_009178_070 Hb_012545_060 Hb_012545_060 Hb_029610_010--Hb_012545_060 Hb_000135_030 Hb_000135_030 Hb_114310_110--Hb_000135_030 Hb_114310_110--Hb_000608_170 Hb_004398_030 Hb_004398_030 Hb_114310_110--Hb_004398_030 Hb_114310_110--Hb_000928_010 Hb_000371_100 Hb_000371_100 Hb_114310_110--Hb_000371_100 Hb_185447_010 Hb_185447_010 Hb_114310_110--Hb_185447_010 Hb_000928_010--Hb_000608_170 Hb_000462_090 Hb_000462_090 Hb_000928_010--Hb_000462_090 Hb_000340_150 Hb_000340_150 Hb_000928_010--Hb_000340_150 Hb_005282_020 Hb_005282_020 Hb_000928_010--Hb_005282_020 Hb_002685_060 Hb_002685_060 Hb_000928_010--Hb_002685_060 Hb_001584_200 Hb_001584_200 Hb_000928_010--Hb_001584_200 Hb_000608_170--Hb_000462_090 Hb_000608_170--Hb_005282_020 Hb_000608_170--Hb_002685_060 Hb_000608_170--Hb_000340_150 Hb_002078_300 Hb_002078_300 Hb_003349_040--Hb_002078_300 Hb_005725_220 Hb_005725_220 Hb_003349_040--Hb_005725_220 Hb_002171_030 Hb_002171_030 Hb_003349_040--Hb_002171_030 Hb_005846_030 Hb_005846_030 Hb_003349_040--Hb_005846_030 Hb_000164_140 Hb_000164_140 Hb_003349_040--Hb_000164_140 Hb_003349_040--Hb_000462_090 Hb_002150_130 Hb_002150_130 Hb_009178_070--Hb_002150_130 Hb_088500_010 Hb_088500_010 Hb_009178_070--Hb_088500_010 Hb_001124_190 Hb_001124_190 Hb_009178_070--Hb_001124_190 Hb_003209_010 Hb_003209_010 Hb_009178_070--Hb_003209_010 Hb_005914_050 Hb_005914_050 Hb_009178_070--Hb_005914_050 Hb_000922_340 Hb_000922_340 Hb_009178_070--Hb_000922_340 Hb_003728_100 Hb_003728_100 Hb_012545_060--Hb_003728_100 Hb_001022_030 Hb_001022_030 Hb_012545_060--Hb_001022_030 Hb_012305_100 Hb_012305_100 Hb_012545_060--Hb_012305_100 Hb_025194_060 Hb_025194_060 Hb_012545_060--Hb_025194_060 Hb_021732_010 Hb_021732_010 Hb_012545_060--Hb_021732_010 Hb_163950_070 Hb_163950_070 Hb_012545_060--Hb_163950_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1148.39 99.5257 1912.49 514.22 633.213 215.506
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1063.68 417.181 962.191 171.341 2944.88

CAGE analysis