Hb_002171_030

Information

Type -
Description -
Location Contig2171: 96903-101803
Sequence    

Annotation

kegg
ID rcu:RCOM_0925410
description palmitoyl-acyl carrier protein thioesterase (EC:3.1.2.14)
nr
ID AHI86053.1
description plastid acyl-ACP thioesterase [Vernicia fordii]
swissprot
ID Q9SQI3
description Palmitoyl-acyl carrier protein thioesterase, chloroplastic OS=Gossypium hirsutum GN=FATB1 PE=1 SV=1
trembl
ID W6CRX8
description Plastid acyl-ACP thioesterase OS=Vernicia fordii GN=FatB PE=2 SV=1
Gene Ontology
ID GO:0016790
description palmitoyl-acyl carrier protein chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22424: 97017-102063
cDNA
(Sanger)
(ID:Location)		 038_J03.ab1: 98913-100730 , 047_P15.ab1: 99107-100730

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002171_030 0.0 - - plastid acyl-ACP thioesterase [Vernicia fordii]
2 Hb_000638_160 0.1459620041 - - PREDICTED: uncharacterized protein LOC105637288 [Jatropha curcas]
3 Hb_001277_100 0.1478878927 - - PREDICTED: 2-methyl-6-phytyl-1,4-hydroquinone methyltransferase, chloroplastic-like isoform X1 [Gossypium raimondii]
4 Hb_000140_270 0.15596312 - - S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Theobroma cacao]
5 Hb_005725_220 0.1562216036 - - PREDICTED: uncharacterized protein LOC105630808 [Jatropha curcas]
6 Hb_000462_090 0.1583932822 - - PREDICTED: carotene epsilon-monooxygenase, chloroplastic [Jatropha curcas]
7 Hb_121089_040 0.159745304 - - PREDICTED: GDSL esterase/lipase At4g10955 [Jatropha curcas]
8 Hb_000340_150 0.1612520629 - - hypothetical protein JCGZ_21975 [Jatropha curcas]
9 Hb_000167_050 0.1612566087 - - PREDICTED: uncharacterized protein LOC105641106 [Jatropha curcas]
10 Hb_002078_300 0.1630263468 - - PREDICTED: uncharacterized protein LOC105644817 isoform X1 [Jatropha curcas]
11 Hb_001811_160 0.1638340763 - - PREDICTED: probable glycosyltransferase At5g03795 [Eucalyptus grandis]
12 Hb_003666_040 0.1685808993 - - PREDICTED: uncharacterized protein LOC105639624 [Jatropha curcas]
13 Hb_006846_150 0.1691364566 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000116_130 0.1696827471 - - PREDICTED: aspartic proteinase Asp1 [Jatropha curcas]
15 Hb_000318_130 0.1704885939 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
16 Hb_005846_030 0.170933828 - - PREDICTED: 50S ribosomal protein L29, chloroplastic [Jatropha curcas]
17 Hb_003349_040 0.1717082908 - - PREDICTED: uncharacterized protein LOC105628285 [Jatropha curcas]
18 Hb_003976_020 0.1737487475 - - Regulator of ribonuclease activity A, putative [Ricinus communis]
19 Hb_000811_070 0.1745047666 - - PREDICTED: uncharacterized protein LOC105650695 [Jatropha curcas]
20 Hb_001946_380 0.1750971119 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 34-like [Jatropha curcas]

Gene co-expression network

sample Hb_002171_030 Hb_002171_030 Hb_000638_160 Hb_000638_160 Hb_002171_030--Hb_000638_160 Hb_001277_100 Hb_001277_100 Hb_002171_030--Hb_001277_100 Hb_000140_270 Hb_000140_270 Hb_002171_030--Hb_000140_270 Hb_005725_220 Hb_005725_220 Hb_002171_030--Hb_005725_220 Hb_000462_090 Hb_000462_090 Hb_002171_030--Hb_000462_090 Hb_121089_040 Hb_121089_040 Hb_002171_030--Hb_121089_040 Hb_000167_050 Hb_000167_050 Hb_000638_160--Hb_000167_050 Hb_005846_030 Hb_005846_030 Hb_000638_160--Hb_005846_030 Hb_014834_130 Hb_014834_130 Hb_000638_160--Hb_014834_130 Hb_011689_120 Hb_011689_120 Hb_000638_160--Hb_011689_120 Hb_000622_240 Hb_000622_240 Hb_000638_160--Hb_000622_240 Hb_000638_160--Hb_000462_090 Hb_000107_430 Hb_000107_430 Hb_001277_100--Hb_000107_430 Hb_000811_070 Hb_000811_070 Hb_001277_100--Hb_000811_070 Hb_006907_060 Hb_006907_060 Hb_001277_100--Hb_006907_060 Hb_007192_030 Hb_007192_030 Hb_001277_100--Hb_007192_030 Hb_011671_260 Hb_011671_260 Hb_001277_100--Hb_011671_260 Hb_000086_080 Hb_000086_080 Hb_001277_100--Hb_000086_080 Hb_140627_010 Hb_140627_010 Hb_000140_270--Hb_140627_010 Hb_012022_170 Hb_012022_170 Hb_000140_270--Hb_012022_170 Hb_007741_100 Hb_007741_100 Hb_000140_270--Hb_007741_100 Hb_027298_010 Hb_027298_010 Hb_000140_270--Hb_027298_010 Hb_019762_050 Hb_019762_050 Hb_000140_270--Hb_019762_050 Hb_000457_290 Hb_000457_290 Hb_000140_270--Hb_000457_290 Hb_000164_140 Hb_000164_140 Hb_005725_220--Hb_000164_140 Hb_001124_180 Hb_001124_180 Hb_005725_220--Hb_001124_180 Hb_005725_220--Hb_005846_030 Hb_002078_300 Hb_002078_300 Hb_005725_220--Hb_002078_300 Hb_005489_090 Hb_005489_090 Hb_005725_220--Hb_005489_090 Hb_029920_030 Hb_029920_030 Hb_005725_220--Hb_029920_030 Hb_001584_200 Hb_001584_200 Hb_000462_090--Hb_001584_200 Hb_000173_250 Hb_000173_250 Hb_000462_090--Hb_000173_250 Hb_000340_150 Hb_000340_150 Hb_000462_090--Hb_000340_150 Hb_000172_580 Hb_000172_580 Hb_000462_090--Hb_000172_580 Hb_009775_010 Hb_009775_010 Hb_000462_090--Hb_009775_010 Hb_003376_230 Hb_003376_230 Hb_000462_090--Hb_003376_230 Hb_001946_380 Hb_001946_380 Hb_121089_040--Hb_001946_380 Hb_001976_030 Hb_001976_030 Hb_121089_040--Hb_001976_030 Hb_001628_120 Hb_001628_120 Hb_121089_040--Hb_001628_120 Hb_000816_200 Hb_000816_200 Hb_121089_040--Hb_000816_200 Hb_001195_770 Hb_001195_770 Hb_121089_040--Hb_001195_770 Hb_003875_030 Hb_003875_030 Hb_121089_040--Hb_003875_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.4469 10.9083 50.6401 46.8247 38.6042 15.989
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
21.1291 74.6954 54.6067 13.3498 123.229

CAGE analysis