Hb_012545_060

Information

Type -
Description -
Location Contig12545: 46455-50559
Sequence    

Annotation

kegg
ID cam:101496335
description uncharacterized LOC101496335
nr
ID XP_009403352.1
description PREDICTED: uncharacterized protein LOC103986927 [Musa acuminata subsp. malaccensis]
swissprot
ID -
description -
trembl
ID M0T419
description Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07815: 47675-50605 , PASA_asmbl_07816: 46657-50624
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012545_060 0.0 - - PREDICTED: uncharacterized protein LOC103986927 [Musa acuminata subsp. malaccensis]
2 Hb_003728_100 0.1118812528 transcription factor TF Family: FAR1 conserved hypothetical protein [Ricinus communis]
3 Hb_001022_030 0.1239613821 - - PREDICTED: sorting nexin 1 [Jatropha curcas]
4 Hb_012305_100 0.1258509553 rubber biosynthesis Gene Name: Dihydrolipoamide dehydrogenase PREDICTED: dihydrolipoyl dehydrogenase 2, chloroplastic-like [Jatropha curcas]
5 Hb_025194_060 0.1301568735 - - PREDICTED: photosynthetic NDH subunit of lumenal location 5, chloroplastic isoform X2 [Jatropha curcas]
6 Hb_021732_010 0.1314636826 - - biotin carboxylase [Vernicia fordii]
7 Hb_163950_070 0.1319985014 - - arginine/serine-rich splicing factor, putative [Ricinus communis]
8 Hb_000284_130 0.1336614558 - - sodium-bile acid cotransporter, putative [Ricinus communis]
9 Hb_005539_010 0.1389440289 - - PREDICTED: uncharacterized protein LOC105644585 [Jatropha curcas]
10 Hb_000029_110 0.1409787545 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001250_070 0.1434883688 - - ATP-citrate synthase, putative [Ricinus communis]
12 Hb_001946_140 0.1441387046 - - PREDICTED: heme oxygenase 1, chloroplastic-like [Jatropha curcas]
13 Hb_004586_430 0.1441473271 - - PREDICTED: 29 kDa ribonucleoprotein, chloroplastic [Jatropha curcas]
14 Hb_000723_350 0.1459412813 - - protein binding protein, putative [Ricinus communis]
15 Hb_156850_100 0.1475332172 - - hypothetical protein CICLE_v10001788mg [Citrus clementina]
16 Hb_003752_070 0.1483031765 - - PREDICTED: uncharacterized protein LOC105643912 isoform X1 [Jatropha curcas]
17 Hb_000207_300 0.149856916 rubber biosynthesis Gene Name: Dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex PREDICTED: dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex, chloroplastic-like [Jatropha curcas]
18 Hb_006538_120 0.1501274943 - - PREDICTED: 50S ribosomal protein L15, chloroplastic [Jatropha curcas]
19 Hb_000920_030 0.151592812 - - short chain alcohol dehydrogenase, putative [Ricinus communis]
20 Hb_107879_010 0.1519311871 - - phosphoglycerate mutase, putative [Ricinus communis]

Gene co-expression network

sample Hb_012545_060 Hb_012545_060 Hb_003728_100 Hb_003728_100 Hb_012545_060--Hb_003728_100 Hb_001022_030 Hb_001022_030 Hb_012545_060--Hb_001022_030 Hb_012305_100 Hb_012305_100 Hb_012545_060--Hb_012305_100 Hb_025194_060 Hb_025194_060 Hb_012545_060--Hb_025194_060 Hb_021732_010 Hb_021732_010 Hb_012545_060--Hb_021732_010 Hb_163950_070 Hb_163950_070 Hb_012545_060--Hb_163950_070 Hb_009225_020 Hb_009225_020 Hb_003728_100--Hb_009225_020 Hb_000207_300 Hb_000207_300 Hb_003728_100--Hb_000207_300 Hb_000221_140 Hb_000221_140 Hb_003728_100--Hb_000221_140 Hb_003462_070 Hb_003462_070 Hb_003728_100--Hb_003462_070 Hb_003728_100--Hb_001022_030 Hb_005405_020 Hb_005405_020 Hb_003728_100--Hb_005405_020 Hb_002874_180 Hb_002874_180 Hb_001022_030--Hb_002874_180 Hb_156850_100 Hb_156850_100 Hb_001022_030--Hb_156850_100 Hb_000539_050 Hb_000539_050 Hb_001022_030--Hb_000539_050 Hb_005539_010 Hb_005539_010 Hb_001022_030--Hb_005539_010 Hb_001022_030--Hb_009225_020 Hb_012305_100--Hb_021732_010 Hb_012305_100--Hb_156850_100 Hb_012305_100--Hb_001022_030 Hb_012305_100--Hb_005539_010 Hb_012305_100--Hb_003728_100 Hb_000802_130 Hb_000802_130 Hb_012305_100--Hb_000802_130 Hb_021650_040 Hb_021650_040 Hb_025194_060--Hb_021650_040 Hb_001946_160 Hb_001946_160 Hb_025194_060--Hb_001946_160 Hb_003304_030 Hb_003304_030 Hb_025194_060--Hb_003304_030 Hb_019053_060 Hb_019053_060 Hb_025194_060--Hb_019053_060 Hb_005127_030 Hb_005127_030 Hb_025194_060--Hb_005127_030 Hb_025194_060--Hb_005539_010 Hb_000284_130 Hb_000284_130 Hb_021732_010--Hb_000284_130 Hb_000003_780 Hb_000003_780 Hb_021732_010--Hb_000003_780 Hb_021732_010--Hb_000802_130 Hb_001541_110 Hb_001541_110 Hb_021732_010--Hb_001541_110 Hb_002027_320 Hb_002027_320 Hb_021732_010--Hb_002027_320 Hb_000608_390 Hb_000608_390 Hb_163950_070--Hb_000608_390 Hb_002986_090 Hb_002986_090 Hb_163950_070--Hb_002986_090 Hb_006198_130 Hb_006198_130 Hb_163950_070--Hb_006198_130 Hb_006787_090 Hb_006787_090 Hb_163950_070--Hb_006787_090 Hb_002044_020 Hb_002044_020 Hb_163950_070--Hb_002044_020 Hb_009288_040 Hb_009288_040 Hb_163950_070--Hb_009288_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.56837 0.699345 12.5685 6.47334 4.06369 2.47332
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.27823 3.77664 2.14475 3.35237 10.7394

CAGE analysis