Hb_003349_040

Information

Type -
Description -
Location Contig3349: 67441-73670
Sequence    

Annotation

kegg
ID pop:POPTR_0013s12910g
description hypothetical protein
nr
ID XP_012065074.1
description PREDICTED: uncharacterized protein LOC105628285 [Jatropha curcas]
swissprot
ID Q7NDP0
description Trigger factor OS=Gloeobacter violaceus (strain PCC 7421) GN=tig PE=3 SV=1
trembl
ID A0A067LJ44
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05726 PE=4 SV=1
Gene Ontology
ID GO:0006457
description ribosome- isoform 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35081: 67480-68441 , PASA_asmbl_35082: 71988-73674 , PASA_asmbl_35083: 72083-72218
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003349_040 0.0 - - PREDICTED: uncharacterized protein LOC105628285 [Jatropha curcas]
2 Hb_002078_300 0.159183286 - - PREDICTED: uncharacterized protein LOC105644817 isoform X1 [Jatropha curcas]
3 Hb_005725_220 0.1624956413 - - PREDICTED: uncharacterized protein LOC105630808 [Jatropha curcas]
4 Hb_002171_030 0.1717082908 - - plastid acyl-ACP thioesterase [Vernicia fordii]
5 Hb_005846_030 0.1759515281 - - PREDICTED: 50S ribosomal protein L29, chloroplastic [Jatropha curcas]
6 Hb_000164_140 0.1782415759 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
7 Hb_000462_090 0.1802235584 - - PREDICTED: carotene epsilon-monooxygenase, chloroplastic [Jatropha curcas]
8 Hb_000608_170 0.1815016071 - - F23N19.4 [Arabidopsis thaliana]
9 Hb_003976_020 0.1819534037 - - Regulator of ribonuclease activity A, putative [Ricinus communis]
10 Hb_000172_380 0.1834486384 - - small heat-shock protein, putative [Ricinus communis]
11 Hb_000059_270 0.185518927 - - superoxide dismutase [Fe], chloroplastic [Jatropha curcas]
12 Hb_114310_110 0.1882653138 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
13 Hb_000638_160 0.1894486736 - - PREDICTED: uncharacterized protein LOC105637288 [Jatropha curcas]
14 Hb_185447_010 0.1965112603 - - hypothetical protein JCGZ_13512 [Jatropha curcas]
15 Hb_029610_010 0.1965887283 - - caffeic acid 3-O-methyltransferase [Hevea brasiliensis]
16 Hb_000300_660 0.1967893007 - - unknown [Glycine max]
17 Hb_002685_060 0.1972802168 - - 30S ribosomal protein S5, putative [Ricinus communis]
18 Hb_000622_240 0.1992646002 - - PREDICTED: protein CURVATURE THYLAKOID 1A, chloroplastic [Jatropha curcas]
19 Hb_000878_030 0.1997228925 - - calcium-dependent protein kinase, putative [Ricinus communis]
20 Hb_000928_010 0.1997553917 - - Cell division protein ftsZ, putative [Ricinus communis]

Gene co-expression network

sample Hb_003349_040 Hb_003349_040 Hb_002078_300 Hb_002078_300 Hb_003349_040--Hb_002078_300 Hb_005725_220 Hb_005725_220 Hb_003349_040--Hb_005725_220 Hb_002171_030 Hb_002171_030 Hb_003349_040--Hb_002171_030 Hb_005846_030 Hb_005846_030 Hb_003349_040--Hb_005846_030 Hb_000164_140 Hb_000164_140 Hb_003349_040--Hb_000164_140 Hb_000462_090 Hb_000462_090 Hb_003349_040--Hb_000462_090 Hb_002078_300--Hb_005725_220 Hb_002078_300--Hb_000164_140 Hb_004109_160 Hb_004109_160 Hb_002078_300--Hb_004109_160 Hb_002078_300--Hb_005846_030 Hb_001792_030 Hb_001792_030 Hb_002078_300--Hb_001792_030 Hb_003941_030 Hb_003941_030 Hb_002078_300--Hb_003941_030 Hb_005725_220--Hb_000164_140 Hb_001124_180 Hb_001124_180 Hb_005725_220--Hb_001124_180 Hb_005725_220--Hb_005846_030 Hb_005489_090 Hb_005489_090 Hb_005725_220--Hb_005489_090 Hb_029920_030 Hb_029920_030 Hb_005725_220--Hb_029920_030 Hb_000638_160 Hb_000638_160 Hb_002171_030--Hb_000638_160 Hb_001277_100 Hb_001277_100 Hb_002171_030--Hb_001277_100 Hb_000140_270 Hb_000140_270 Hb_002171_030--Hb_000140_270 Hb_002171_030--Hb_005725_220 Hb_002171_030--Hb_000462_090 Hb_121089_040 Hb_121089_040 Hb_002171_030--Hb_121089_040 Hb_007632_170 Hb_007632_170 Hb_005846_030--Hb_007632_170 Hb_001712_020 Hb_001712_020 Hb_005846_030--Hb_001712_020 Hb_005846_030--Hb_000164_140 Hb_005846_030--Hb_000638_160 Hb_000167_050 Hb_000167_050 Hb_005846_030--Hb_000167_050 Hb_005276_010 Hb_005276_010 Hb_000164_140--Hb_005276_010 Hb_000164_140--Hb_029920_030 Hb_000028_110 Hb_000028_110 Hb_000164_140--Hb_000028_110 Hb_001584_200 Hb_001584_200 Hb_000462_090--Hb_001584_200 Hb_000173_250 Hb_000173_250 Hb_000462_090--Hb_000173_250 Hb_000340_150 Hb_000340_150 Hb_000462_090--Hb_000340_150 Hb_000172_580 Hb_000172_580 Hb_000462_090--Hb_000172_580 Hb_009775_010 Hb_009775_010 Hb_000462_090--Hb_009775_010 Hb_003376_230 Hb_003376_230 Hb_000462_090--Hb_003376_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.48943 0.15301 2.54974 2.32461 1.91953 0.549917
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.64002 3.26495 2.37274 0.891732 9.22954

CAGE analysis