Hb_002471_100

Information

Type -
Description -
Location Contig2471: 83895-89013
Sequence    

Annotation

kegg
ID rcu:RCOM_1150020
description Anthranilate synthase component II, putative (EC:4.1.3.27)
nr
ID XP_012072372.1
description PREDICTED: anthranilate synthase beta subunit 1, chloroplastic-like [Jatropha curcas]
swissprot
ID Q42565
description Anthranilate synthase beta subunit 1, chloroplastic OS=Arabidopsis thaliana GN=ASB1 PE=1 SV=1
trembl
ID A0A067L260
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04812 PE=4 SV=1
Gene Ontology
ID GO:0005739
description anthranilate synthase beta subunit chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25653: 88393-88978 , PASA_asmbl_25654: 83884-86824
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002471_100 0.0 - - PREDICTED: anthranilate synthase beta subunit 1, chloroplastic-like [Jatropha curcas]
2 Hb_002301_290 0.1301701138 transcription factor TF Family: SBP Squamosa promoter-binding protein, putative [Ricinus communis]
3 Hb_001373_150 0.1642967833 - - PREDICTED: uncharacterized protein LOC105628778 [Jatropha curcas]
4 Hb_000072_070 0.1713612924 rubber biosynthesis Gene Name: Farnesyl diphosphate synthase farnesyl diphosphate synthase [Hevea brasiliensis]
5 Hb_035273_030 0.1717459688 rubber biosynthesis Gene Name: Mevalonate kinase mevalonate kinase [Hevea brasiliensis]
6 Hb_011316_100 0.1776526269 - - PREDICTED: glycosyltransferase family 64 protein C4-like [Jatropha curcas]
7 Hb_005892_060 0.1823406598 - - PREDICTED: uncharacterized protein LOC105632176 isoform X2 [Jatropha curcas]
8 Hb_000630_070 0.1847017482 - - PREDICTED: cell division protein FtsZ homolog 2-1, chloroplastic [Jatropha curcas]
9 Hb_000575_030 0.1853950262 - - unnamed protein product [Vitis vinifera]
10 Hb_004286_040 0.1861406751 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH74 isoform X1 [Jatropha curcas]
11 Hb_074197_010 0.1898366215 - - PREDICTED: methylsterol monooxygenase 1-1-like [Jatropha curcas]
12 Hb_006570_070 0.189991062 - - cyclophilin [Hevea brasiliensis]
13 Hb_000069_600 0.1926278435 - - PREDICTED: mitochondrial adenine nucleotide transporter ADNT1 [Jatropha curcas]
14 Hb_000331_440 0.1933123931 - - hypothetical protein POPTR_0015s10290g [Populus trichocarpa]
15 Hb_002054_010 0.1934986011 - - PREDICTED: heptahelical transmembrane protein 1 [Jatropha curcas]
16 Hb_015057_060 0.193898246 - - -
17 Hb_000096_090 0.194455427 - - hypothetical protein JCGZ_12551 [Jatropha curcas]
18 Hb_030565_130 0.1946977802 - - hypothetical protein JCGZ_01083 [Jatropha curcas]
19 Hb_002681_020 0.1949680773 - - aldose 1-epimerase, putative [Ricinus communis]
20 Hb_000421_180 0.1950549274 - - ATP binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_002471_100 Hb_002471_100 Hb_002301_290 Hb_002301_290 Hb_002471_100--Hb_002301_290 Hb_001373_150 Hb_001373_150 Hb_002471_100--Hb_001373_150 Hb_000072_070 Hb_000072_070 Hb_002471_100--Hb_000072_070 Hb_035273_030 Hb_035273_030 Hb_002471_100--Hb_035273_030 Hb_011316_100 Hb_011316_100 Hb_002471_100--Hb_011316_100 Hb_005892_060 Hb_005892_060 Hb_002471_100--Hb_005892_060 Hb_002301_290--Hb_001373_150 Hb_008554_020 Hb_008554_020 Hb_002301_290--Hb_008554_020 Hb_000390_200 Hb_000390_200 Hb_002301_290--Hb_000390_200 Hb_004310_030 Hb_004310_030 Hb_002301_290--Hb_004310_030 Hb_006501_110 Hb_006501_110 Hb_002301_290--Hb_006501_110 Hb_030565_130 Hb_030565_130 Hb_001373_150--Hb_030565_130 Hb_001373_150--Hb_008554_020 Hb_002235_400 Hb_002235_400 Hb_001373_150--Hb_002235_400 Hb_000184_040 Hb_000184_040 Hb_001373_150--Hb_000184_040 Hb_001373_150--Hb_006501_110 Hb_000072_070--Hb_011316_100 Hb_000189_310 Hb_000189_310 Hb_000072_070--Hb_000189_310 Hb_004007_160 Hb_004007_160 Hb_000072_070--Hb_004007_160 Hb_008062_040 Hb_008062_040 Hb_000072_070--Hb_008062_040 Hb_001085_050 Hb_001085_050 Hb_000072_070--Hb_001085_050 Hb_000575_030 Hb_000575_030 Hb_000072_070--Hb_000575_030 Hb_005433_040 Hb_005433_040 Hb_035273_030--Hb_005433_040 Hb_022181_020 Hb_022181_020 Hb_035273_030--Hb_022181_020 Hb_000069_600 Hb_000069_600 Hb_035273_030--Hb_000069_600 Hb_001983_020 Hb_001983_020 Hb_035273_030--Hb_001983_020 Hb_003732_020 Hb_003732_020 Hb_035273_030--Hb_003732_020 Hb_001100_060 Hb_001100_060 Hb_035273_030--Hb_001100_060 Hb_011316_100--Hb_035273_030 Hb_007479_050 Hb_007479_050 Hb_011316_100--Hb_007479_050 Hb_002183_070 Hb_002183_070 Hb_011316_100--Hb_002183_070 Hb_001053_180 Hb_001053_180 Hb_011316_100--Hb_001053_180 Hb_001328_040 Hb_001328_040 Hb_011316_100--Hb_001328_040 Hb_000699_110 Hb_000699_110 Hb_005892_060--Hb_000699_110 Hb_002226_030 Hb_002226_030 Hb_005892_060--Hb_002226_030 Hb_002900_140 Hb_002900_140 Hb_005892_060--Hb_002900_140 Hb_005892_060--Hb_002301_290 Hb_074197_010 Hb_074197_010 Hb_005892_060--Hb_074197_010 Hb_000997_270 Hb_000997_270 Hb_005892_060--Hb_000997_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.0064 1.20728 3.45729 4.04359 4.48055 4.39696
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
24.5919 4.48896 7.82727 3.95617 6.15214

CAGE analysis