Hb_025311_020

Information

Type -
Description -
Location Contig25311: 27132-36026
Sequence    

Annotation

kegg
ID vvi:104878142
description uncharacterized LOC104878142
nr
ID XP_010914014.1
description PREDICTED: uncharacterized protein LOC105039527 [Elaeis guineensis]
swissprot
ID -
description -
trembl
ID F6H351
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0008g06900 PE=4 SV=1
Gene Ontology
ID GO:0046872
description PREDICTED: uncharacterized protein LOC105039527

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26473: 26903-31424 , PASA_asmbl_26474: 26903-31424 , PASA_asmbl_26475: 26646-31774
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_025311_020 0.0 - - PREDICTED: uncharacterized protein LOC105039527 [Elaeis guineensis]
2 Hb_009615_080 0.218357206 - - hypothetical protein JCGZ_24461 [Jatropha curcas]
3 Hb_012424_010 0.2539323426 - - PREDICTED: uncharacterized protein LOC105634770 [Jatropha curcas]
4 Hb_000820_060 0.2602355591 - - -
5 Hb_001045_110 0.2607194969 transcription factor TF Family: M-type flowering locus C-like protein [Juglans regia]
6 Hb_000190_240 0.2635294976 - - unnamed protein product [Coffea canephora]
7 Hb_000296_060 0.2654090495 - - -
8 Hb_001550_050 0.2672902082 - - PREDICTED: J domain-containing protein spf31 [Eucalyptus grandis]
9 Hb_000450_150 0.2744792906 - - Anthocyanin 5-aromatic acyltransferase, putative [Ricinus communis]
10 Hb_001304_120 0.2758285337 transcription factor TF Family: WRKY WRKY protein [Hevea brasiliensis]
11 Hb_001943_020 0.277210978 - - PREDICTED: (S)-coclaurine N-methyltransferase-like, partial [Populus euphratica]
12 Hb_177179_010 0.2777682349 - - PREDICTED: putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 2 [Populus euphratica]
13 Hb_000276_050 0.2793917686 - - -
14 Hb_000115_010 0.2794319355 - - 5-methyltetrahydrofolate:homocysteine methyltransferase, putative [Ricinus communis]
15 Hb_002571_090 0.2821988162 - - -
16 Hb_000820_050 0.2849102846 - - hypothetical protein EUGRSUZ_H02626 [Eucalyptus grandis]
17 Hb_187513_010 0.2851925784 - - PREDICTED: uncharacterized protein LOC105761922 [Gossypium raimondii]
18 Hb_000205_340 0.2894311023 - - PREDICTED: putative B3 domain-containing protein At2g27410 [Jatropha curcas]
19 Hb_029866_030 0.2918804445 - - hypothetical protein CICLE_v10006898mg [Citrus clementina]
20 Hb_003551_030 0.294542338 - - hypothetical protein POPTR_0016s03850g [Populus trichocarpa]

Gene co-expression network

sample Hb_025311_020 Hb_025311_020 Hb_009615_080 Hb_009615_080 Hb_025311_020--Hb_009615_080 Hb_012424_010 Hb_012424_010 Hb_025311_020--Hb_012424_010 Hb_000820_060 Hb_000820_060 Hb_025311_020--Hb_000820_060 Hb_001045_110 Hb_001045_110 Hb_025311_020--Hb_001045_110 Hb_000190_240 Hb_000190_240 Hb_025311_020--Hb_000190_240 Hb_000296_060 Hb_000296_060 Hb_025311_020--Hb_000296_060 Hb_000876_040 Hb_000876_040 Hb_009615_080--Hb_000876_040 Hb_007125_010 Hb_007125_010 Hb_009615_080--Hb_007125_010 Hb_009615_080--Hb_012424_010 Hb_187513_010 Hb_187513_010 Hb_009615_080--Hb_187513_010 Hb_002513_050 Hb_002513_050 Hb_009615_080--Hb_002513_050 Hb_003551_030 Hb_003551_030 Hb_012424_010--Hb_003551_030 Hb_069783_020 Hb_069783_020 Hb_012424_010--Hb_069783_020 Hb_012424_010--Hb_000296_060 Hb_001987_010 Hb_001987_010 Hb_012424_010--Hb_001987_010 Hb_012424_010--Hb_187513_010 Hb_000205_340 Hb_000205_340 Hb_012424_010--Hb_000205_340 Hb_000820_050 Hb_000820_050 Hb_000820_060--Hb_000820_050 Hb_000115_010 Hb_000115_010 Hb_000820_060--Hb_000115_010 Hb_006472_080 Hb_006472_080 Hb_000820_060--Hb_006472_080 Hb_105328_010 Hb_105328_010 Hb_000820_060--Hb_105328_010 Hb_000032_450 Hb_000032_450 Hb_000820_060--Hb_000032_450 Hb_006268_020 Hb_006268_020 Hb_000820_060--Hb_006268_020 Hb_000144_040 Hb_000144_040 Hb_001045_110--Hb_000144_040 Hb_001045_110--Hb_000115_010 Hb_000450_150 Hb_000450_150 Hb_001045_110--Hb_000450_150 Hb_001045_110--Hb_000820_050 Hb_001045_110--Hb_000820_060 Hb_183672_010 Hb_183672_010 Hb_000190_240--Hb_183672_010 Hb_001943_020 Hb_001943_020 Hb_000190_240--Hb_001943_020 Hb_000440_030 Hb_000440_030 Hb_000190_240--Hb_000440_030 Hb_005599_060 Hb_005599_060 Hb_000190_240--Hb_005599_060 Hb_006280_010 Hb_006280_010 Hb_000190_240--Hb_006280_010 Hb_000296_060--Hb_187513_010 Hb_002571_090 Hb_002571_090 Hb_000296_060--Hb_002571_090 Hb_000296_060--Hb_069783_020 Hb_000296_060--Hb_003551_030 Hb_000296_060--Hb_000205_340
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0748241 0.0352949 0.171837 0.632622 0.0125575 0.046768
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0285352 0 4.27242 0.939967 0.989416

CAGE analysis