Hb_000190_240

Information

Type -
Description -
Location Contig190: 337107-337916
Sequence    

Annotation

kegg
ID egr:104424031
description uncharacterized LOC104424031
nr
ID CDP03738.1
description unnamed protein product [Coffea canephora]
swissprot
ID -
description -
trembl
ID A0A068U827
description Coffea canephora DH200=94 genomic scaffold, scaffold_11 OS=Coffea canephora GN=GSCOC_T00016212001 PE=4 SV=1
Gene Ontology
ID GO:0005488
description zinc cchc-type-like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18939: 331817-336395
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000190_240 0.0 - - unnamed protein product [Coffea canephora]
2 Hb_183672_010 0.1939341647 - - PREDICTED: (S)-tetrahydroprotoberberine N-methyltransferase isoform X3 [Jatropha curcas]
3 Hb_025311_020 0.2635294976 - - PREDICTED: uncharacterized protein LOC105039527 [Elaeis guineensis]
4 Hb_001943_020 0.2659705985 - - PREDICTED: (S)-coclaurine N-methyltransferase-like, partial [Populus euphratica]
5 Hb_000440_030 0.2964091807 - - 50 kDa protein [Hevea brasiliensis]
6 Hb_005599_060 0.3001262687 - - PREDICTED: syntaxin-72 isoform X1 [Jatropha curcas]
7 Hb_006280_010 0.3022974435 transcription factor TF Family: ERF PREDICTED: AP2-like ethylene-responsive transcription factor TOE3 isoform X2 [Jatropha curcas]
8 Hb_009615_080 0.3149014719 - - hypothetical protein JCGZ_24461 [Jatropha curcas]
9 Hb_000820_050 0.3219944284 - - hypothetical protein EUGRSUZ_H02626 [Eucalyptus grandis]
10 Hb_002078_170 0.3226763283 - - ELMO/CED-12 domain-containing protein isoform 3 [Theobroma cacao]
11 Hb_000820_060 0.3234910125 - - -
12 Hb_000043_070 0.3275268897 - - PREDICTED: transcription factor IBH1 [Jatropha curcas]
13 Hb_001235_080 0.3282730006 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000964_060 0.3360128321 - - hypothetical protein POPTR_0009s06660g [Populus trichocarpa]
15 Hb_000192_110 0.3382842556 - - PREDICTED: uncharacterized protein LOC105646856 [Jatropha curcas]
16 Hb_003002_030 0.338296791 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
17 Hb_000276_050 0.3395810933 - - -
18 Hb_000733_130 0.3415260135 - - PREDICTED: cucumisin [Vitis vinifera]
19 Hb_006911_050 0.3429217237 - - PREDICTED: uncharacterized protein LOC105628750 [Jatropha curcas]
20 Hb_000705_280 0.3435013439 - - PREDICTED: uncharacterized protein LOC104601116 [Nelumbo nucifera]

Gene co-expression network

sample Hb_000190_240 Hb_000190_240 Hb_183672_010 Hb_183672_010 Hb_000190_240--Hb_183672_010 Hb_025311_020 Hb_025311_020 Hb_000190_240--Hb_025311_020 Hb_001943_020 Hb_001943_020 Hb_000190_240--Hb_001943_020 Hb_000440_030 Hb_000440_030 Hb_000190_240--Hb_000440_030 Hb_005599_060 Hb_005599_060 Hb_000190_240--Hb_005599_060 Hb_006280_010 Hb_006280_010 Hb_000190_240--Hb_006280_010 Hb_183672_010--Hb_001943_020 Hb_001235_080 Hb_001235_080 Hb_183672_010--Hb_001235_080 Hb_183672_010--Hb_000440_030 Hb_183672_010--Hb_005599_060 Hb_002078_170 Hb_002078_170 Hb_183672_010--Hb_002078_170 Hb_009615_080 Hb_009615_080 Hb_025311_020--Hb_009615_080 Hb_012424_010 Hb_012424_010 Hb_025311_020--Hb_012424_010 Hb_000820_060 Hb_000820_060 Hb_025311_020--Hb_000820_060 Hb_001045_110 Hb_001045_110 Hb_025311_020--Hb_001045_110 Hb_000296_060 Hb_000296_060 Hb_025311_020--Hb_000296_060 Hb_000226_100 Hb_000226_100 Hb_001943_020--Hb_000226_100 Hb_001943_020--Hb_000440_030 Hb_000705_280 Hb_000705_280 Hb_001943_020--Hb_000705_280 Hb_001943_020--Hb_002078_170 Hb_000440_030--Hb_000705_280 Hb_000638_040 Hb_000638_040 Hb_000440_030--Hb_000638_040 Hb_004316_090 Hb_004316_090 Hb_000440_030--Hb_004316_090 Hb_007975_040 Hb_007975_040 Hb_000440_030--Hb_007975_040 Hb_000440_030--Hb_000226_100 Hb_074238_010 Hb_074238_010 Hb_000440_030--Hb_074238_010 Hb_005599_060--Hb_002078_170 Hb_001310_090 Hb_001310_090 Hb_005599_060--Hb_001310_090 Hb_000032_450 Hb_000032_450 Hb_005599_060--Hb_000032_450 Hb_001287_010 Hb_001287_010 Hb_005599_060--Hb_001287_010 Hb_004460_010 Hb_004460_010 Hb_006280_010--Hb_004460_010 Hb_001035_070 Hb_001035_070 Hb_006280_010--Hb_001035_070 Hb_002513_030 Hb_002513_030 Hb_006280_010--Hb_002513_030 Hb_000213_080 Hb_000213_080 Hb_006280_010--Hb_000213_080 Hb_177179_010 Hb_177179_010 Hb_006280_010--Hb_177179_010 Hb_001277_090 Hb_001277_090 Hb_006280_010--Hb_001277_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.527593 0.0291313 0.15724 0.460313 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 2.26872 0.380148 0.209826

CAGE analysis