Hb_000165_150

Information

Type -
Description -
Location Contig165: 135979-136515
Sequence    

Annotation

kegg
ID pop:POPTR_0010s19280g
description POPTRDRAFT_659473; hypothetical protein
nr
ID XP_012086937.1
description PREDICTED: pistil-specific extensin-like protein [Jatropha curcas]
swissprot
ID P93013
description Non-classical arabinogalactan protein 30 OS=Arabidopsis thaliana GN=AGP30 PE=2 SV=1
trembl
ID B9HSK7
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s19280g PE=4 SV=1
Gene Ontology
ID GO:0048767
description pistil-specific extensin-like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15197: 130718-135070
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000165_150 0.0 - - PREDICTED: pistil-specific extensin-like protein [Jatropha curcas]
2 Hb_089419_010 0.2769666907 - - PREDICTED: uncharacterized protein LOC105795045 [Gossypium raimondii]
3 Hb_003711_030 0.3168335253 - - PREDICTED: uncharacterized protein LOC102621950 [Citrus sinensis]
4 Hb_062482_010 0.3182766586 - - -
5 Hb_000172_130 0.3216594804 - - hypothetical protein JCGZ_24076 [Jatropha curcas]
6 Hb_011478_010 0.3304438644 - - -
7 Hb_167183_010 0.3323340639 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
8 Hb_003002_030 0.3352792699 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
9 Hb_096077_010 0.3355895818 - - Desacetoxyvindoline 4-hydroxylase, putative [Ricinus communis]
10 Hb_022132_020 0.3357130994 - - hypothetical protein TRIUR3_12476 [Triticum urartu]
11 Hb_000948_090 0.3512620663 - - carbonic anhydrase, putative [Ricinus communis]
12 Hb_007545_020 0.3599612311 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Nicotiana tomentosiformis]
13 Hb_001952_040 0.3601124752 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
14 Hb_143874_010 0.3724095985 - - PREDICTED: uncharacterized protein LOC105794100 [Gossypium raimondii]
15 Hb_010757_010 0.3901907368 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
16 Hb_028755_010 0.3957402638 - - PREDICTED: uncharacterized protein LOC104894399 [Beta vulgaris subsp. vulgaris]
17 Hb_057451_040 0.3974352944 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
18 Hb_000772_040 0.3981242649 - - PREDICTED: uncharacterized protein LOC105036273 [Elaeis guineensis]
19 Hb_000101_150 0.406931857 - - -
20 Hb_001703_120 0.4087990205 - - PREDICTED: uncharacterized protein LOC105116966 isoform X2 [Populus euphratica]

Gene co-expression network

sample Hb_000165_150 Hb_000165_150 Hb_089419_010 Hb_089419_010 Hb_000165_150--Hb_089419_010 Hb_003711_030 Hb_003711_030 Hb_000165_150--Hb_003711_030 Hb_062482_010 Hb_062482_010 Hb_000165_150--Hb_062482_010 Hb_000172_130 Hb_000172_130 Hb_000165_150--Hb_000172_130 Hb_011478_010 Hb_011478_010 Hb_000165_150--Hb_011478_010 Hb_167183_010 Hb_167183_010 Hb_000165_150--Hb_167183_010 Hb_000948_090 Hb_000948_090 Hb_089419_010--Hb_000948_090 Hb_001952_040 Hb_001952_040 Hb_089419_010--Hb_001952_040 Hb_139576_010 Hb_139576_010 Hb_089419_010--Hb_139576_010 Hb_003002_030 Hb_003002_030 Hb_089419_010--Hb_003002_030 Hb_166124_010 Hb_166124_010 Hb_089419_010--Hb_166124_010 Hb_003711_030--Hb_011478_010 Hb_057451_040 Hb_057451_040 Hb_003711_030--Hb_057451_040 Hb_003711_030--Hb_167183_010 Hb_000268_100 Hb_000268_100 Hb_003711_030--Hb_000268_100 Hb_002025_090 Hb_002025_090 Hb_003711_030--Hb_002025_090 Hb_002122_020 Hb_002122_020 Hb_003711_030--Hb_002122_020 Hb_002733_030 Hb_002733_030 Hb_062482_010--Hb_002733_030 Hb_028755_010 Hb_028755_010 Hb_062482_010--Hb_028755_010 Hb_003881_050 Hb_003881_050 Hb_062482_010--Hb_003881_050 Hb_004724_230 Hb_004724_230 Hb_062482_010--Hb_004724_230 Hb_003446_040 Hb_003446_040 Hb_062482_010--Hb_003446_040 Hb_025457_010 Hb_025457_010 Hb_062482_010--Hb_025457_010 Hb_004195_220 Hb_004195_220 Hb_000172_130--Hb_004195_220 Hb_000172_130--Hb_167183_010 Hb_000172_130--Hb_057451_040 Hb_001206_010 Hb_001206_010 Hb_000172_130--Hb_001206_010 Hb_143874_010 Hb_143874_010 Hb_000172_130--Hb_143874_010 Hb_151320_010 Hb_151320_010 Hb_000172_130--Hb_151320_010 Hb_011478_010--Hb_167183_010 Hb_011478_010--Hb_057451_040 Hb_011478_010--Hb_000268_100 Hb_011478_010--Hb_002025_090 Hb_011478_010--Hb_002122_020 Hb_141425_010 Hb_141425_010 Hb_167183_010--Hb_141425_010 Hb_000987_110 Hb_000987_110 Hb_167183_010--Hb_000987_110 Hb_123396_010 Hb_123396_010 Hb_167183_010--Hb_123396_010 Hb_009268_030 Hb_009268_030 Hb_167183_010--Hb_009268_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0512898 0 0 0 0 0.345508
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.484439 0 0.356804

CAGE analysis