Hb_143874_010

Information

Type -
Description -
Location Contig143874: 1204-2217
Sequence    

Annotation

kegg
ID tcc:TCM_039262
description Gag protease polyprotein
nr
ID XP_012478546.1
description PREDICTED: uncharacterized protein LOC105794100 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A0B0NAW6
description Hexaprenyldihydroxybenzoate methyltransferase, mitochondrial-like protein OS=Gossypium arboreum GN=F383_13104 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_143874_010 0.0 - - PREDICTED: uncharacterized protein LOC105794100 [Gossypium raimondii]
2 Hb_001987_010 0.2542285693 - - -
3 Hb_000205_340 0.2591996643 - - PREDICTED: putative B3 domain-containing protein At2g27410 [Jatropha curcas]
4 Hb_003551_030 0.2641941871 - - hypothetical protein POPTR_0016s03850g [Populus trichocarpa]
5 Hb_000296_060 0.2663902858 - - -
6 Hb_000172_130 0.2676088268 - - hypothetical protein JCGZ_24076 [Jatropha curcas]
7 Hb_001693_040 0.2769375119 - - -
8 Hb_035687_010 0.2944398603 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
9 Hb_004212_040 0.2971561648 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
10 Hb_002571_090 0.302039125 - - -
11 Hb_010736_030 0.3036440221 - - -
12 Hb_012424_010 0.3051664336 - - PREDICTED: uncharacterized protein LOC105634770 [Jatropha curcas]
13 Hb_001221_370 0.3083275602 - - hypothetical protein MIMGU_mgv1a020064mg, partial [Erythranthe guttata]
14 Hb_000276_050 0.3224483558 - - -
15 Hb_069783_020 0.3258486357 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105647845 [Jatropha curcas]
16 Hb_001206_010 0.3273745217 - - PREDICTED: uncharacterized protein LOC105795045 [Gossypium raimondii]
17 Hb_006157_050 0.3312963584 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
18 Hb_065943_010 0.3325741908 - - -
19 Hb_099723_010 0.3356519343 - - hypothetical protein JCGZ_15340 [Jatropha curcas]
20 Hb_000940_190 0.3366317989 - - PREDICTED: uncharacterized protein LOC104878039 [Vitis vinifera]

Gene co-expression network

sample Hb_143874_010 Hb_143874_010 Hb_001987_010 Hb_001987_010 Hb_143874_010--Hb_001987_010 Hb_000205_340 Hb_000205_340 Hb_143874_010--Hb_000205_340 Hb_003551_030 Hb_003551_030 Hb_143874_010--Hb_003551_030 Hb_000296_060 Hb_000296_060 Hb_143874_010--Hb_000296_060 Hb_000172_130 Hb_000172_130 Hb_143874_010--Hb_000172_130 Hb_001693_040 Hb_001693_040 Hb_143874_010--Hb_001693_040 Hb_001987_010--Hb_003551_030 Hb_001987_010--Hb_001693_040 Hb_001987_010--Hb_000205_340 Hb_012424_010 Hb_012424_010 Hb_001987_010--Hb_012424_010 Hb_001987_010--Hb_000296_060 Hb_069783_020 Hb_069783_020 Hb_001987_010--Hb_069783_020 Hb_000205_340--Hb_003551_030 Hb_002571_090 Hb_002571_090 Hb_000205_340--Hb_002571_090 Hb_000205_340--Hb_000296_060 Hb_000205_340--Hb_012424_010 Hb_000205_340--Hb_001693_040 Hb_003551_030--Hb_001693_040 Hb_003551_030--Hb_069783_020 Hb_003551_030--Hb_012424_010 Hb_003551_030--Hb_000296_060 Hb_187513_010 Hb_187513_010 Hb_000296_060--Hb_187513_010 Hb_000296_060--Hb_002571_090 Hb_000296_060--Hb_069783_020 Hb_000296_060--Hb_012424_010 Hb_004195_220 Hb_004195_220 Hb_000172_130--Hb_004195_220 Hb_167183_010 Hb_167183_010 Hb_000172_130--Hb_167183_010 Hb_057451_040 Hb_057451_040 Hb_000172_130--Hb_057451_040 Hb_001206_010 Hb_001206_010 Hb_000172_130--Hb_001206_010 Hb_151320_010 Hb_151320_010 Hb_000172_130--Hb_151320_010 Hb_001693_040--Hb_069783_020 Hb_001693_040--Hb_012424_010 Hb_001693_040--Hb_000296_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0181247 0 0 0 0.0239231
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.216512 0.0157484 0.0802199

CAGE analysis