Hb_002733_030

Information

Type -
Description -
Location Contig2733: 17793-25377
Sequence    

Annotation

kegg
ID -
description -
nr
ID XP_009802667.1
description PREDICTED: uncharacterized protein LOC104248159 [Nicotiana sylvestris]
swissprot
ID -
description -
trembl
ID M1AZY6
description Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400013049 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28530: 17698-25336
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002733_030 0.0 - - PREDICTED: uncharacterized protein LOC104248159 [Nicotiana sylvestris]
2 Hb_025457_010 0.1926758637 - - -
3 Hb_002028_100 0.2060206707 - - PREDICTED: uncharacterized protein LOC102624085 [Citrus sinensis]
4 Hb_002232_450 0.2102626846 - - PREDICTED: probable methyltransferase PMT11 [Jatropha curcas]
5 Hb_003881_050 0.2401937982 - - PREDICTED: uncharacterized protein LOC104213140 [Nicotiana sylvestris]
6 Hb_001965_010 0.2466012776 - - PREDICTED: uncharacterized protein LOC104106381 [Nicotiana tomentosiformis]
7 Hb_002686_380 0.2481382205 - - -
8 Hb_001703_120 0.2594293019 - - PREDICTED: uncharacterized protein LOC105116966 isoform X2 [Populus euphratica]
9 Hb_015707_010 0.2625360167 - - hypothetical protein JCGZ_09913 [Jatropha curcas]
10 Hb_167300_010 0.2756831593 - - -
11 Hb_010317_020 0.2783590999 - - PREDICTED: sarcoplasmic reticulum histidine-rich calcium-binding protein [Jatropha curcas]
12 Hb_085863_020 0.2785248836 transcription factor TF Family: MYB-related PREDICTED: telomere repeat-binding factor 1 [Jatropha curcas]
13 Hb_097968_010 0.2798594504 - - hypothetical protein PRUPE_ppa001143mg [Prunus persica]
14 Hb_062482_010 0.2812164887 - - -
15 Hb_001545_210 0.2852629004 - - hypothetical protein JCGZ_11132 [Jatropha curcas]
16 Hb_003861_020 0.2890397642 - - PREDICTED: zinc finger CCCH domain-containing protein 48-like isoform X2 [Nelumbo nucifera]
17 Hb_004103_030 0.2897339085 - - conserved hypothetical protein [Ricinus communis]
18 Hb_022288_020 0.2930398212 - - hypothetical protein POPTR_0006s08590g [Populus trichocarpa]
19 Hb_010317_030 0.2947194763 - - unknown [Picea sitchensis]
20 Hb_022148_010 0.2956068208 - - PREDICTED: uncharacterized protein LOC105638910 [Jatropha curcas]

Gene co-expression network

sample Hb_002733_030 Hb_002733_030 Hb_025457_010 Hb_025457_010 Hb_002733_030--Hb_025457_010 Hb_002028_100 Hb_002028_100 Hb_002733_030--Hb_002028_100 Hb_002232_450 Hb_002232_450 Hb_002733_030--Hb_002232_450 Hb_003881_050 Hb_003881_050 Hb_002733_030--Hb_003881_050 Hb_001965_010 Hb_001965_010 Hb_002733_030--Hb_001965_010 Hb_002686_380 Hb_002686_380 Hb_002733_030--Hb_002686_380 Hb_009421_010 Hb_009421_010 Hb_025457_010--Hb_009421_010 Hb_097968_010 Hb_097968_010 Hb_025457_010--Hb_097968_010 Hb_025457_010--Hb_002232_450 Hb_025457_010--Hb_002686_380 Hb_008370_010 Hb_008370_010 Hb_025457_010--Hb_008370_010 Hb_002028_100--Hb_002232_450 Hb_015707_010 Hb_015707_010 Hb_002028_100--Hb_015707_010 Hb_002028_100--Hb_097968_010 Hb_000590_040 Hb_000590_040 Hb_002028_100--Hb_000590_040 Hb_002028_100--Hb_025457_010 Hb_000012_300 Hb_000012_300 Hb_002232_450--Hb_000012_300 Hb_002232_450--Hb_015707_010 Hb_002232_450--Hb_097968_010 Hb_038011_010 Hb_038011_010 Hb_003881_050--Hb_038011_010 Hb_001242_090 Hb_001242_090 Hb_003881_050--Hb_001242_090 Hb_085863_020 Hb_085863_020 Hb_003881_050--Hb_085863_020 Hb_073452_010 Hb_073452_010 Hb_003881_050--Hb_073452_010 Hb_090497_010 Hb_090497_010 Hb_003881_050--Hb_090497_010 Hb_003688_160 Hb_003688_160 Hb_003881_050--Hb_003688_160 Hb_001496_030 Hb_001496_030 Hb_001965_010--Hb_001496_030 Hb_167300_010 Hb_167300_010 Hb_001965_010--Hb_167300_010 Hb_001965_010--Hb_002686_380 Hb_007545_020 Hb_007545_020 Hb_001965_010--Hb_007545_020 Hb_001703_120 Hb_001703_120 Hb_001965_010--Hb_001703_120 Hb_002686_380--Hb_001703_120 Hb_003861_020 Hb_003861_020 Hb_002686_380--Hb_003861_020 Hb_176825_010 Hb_176825_010 Hb_002686_380--Hb_176825_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.45631 0.219561 0.0707279 0.058417 9.07486 22.9699
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0418645 0.0329306 26.9787 13.0266 4.83157

CAGE analysis