Hb_123046_010

Information

Type -
Description -
Location Contig123046: 1787-2524
Sequence    

Annotation

kegg
ID tcc:TCM_036130
description CCHC-type integrase
nr
ID XP_012487865.1
description PREDICTED: uncharacterized protein LOC105801076 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A061FI28
description CCHC-type integrase OS=Theobroma cacao GN=TCM_036130 PE=4 SV=1
Gene Ontology
ID GO:0005488
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_123046_010 0.0 - - PREDICTED: uncharacterized protein LOC105801076 [Gossypium raimondii]
2 Hb_131102_010 0.2645669073 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
3 Hb_133820_010 0.2772743126 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
4 Hb_003523_040 0.2803761155 - - F15O4.13 [Arabidopsis thaliana]
5 Hb_154726_010 0.2842736934 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
6 Hb_159036_010 0.2908510996 - - -
7 Hb_170559_010 0.299083703 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
8 Hb_017075_020 0.3012268014 - - PREDICTED: uncharacterized protein LOC105797726 [Gossypium raimondii]
9 Hb_122556_010 0.3024295093 - - PREDICTED: uncharacterized protein LOC104216022, partial [Nicotiana sylvestris]
10 Hb_007054_050 0.3059490947 - - -
11 Hb_011287_070 0.3133651726 - - -
12 Hb_002360_020 0.3154295117 - - ABC transporter family protein [Hevea brasiliensis]
13 Hb_001282_030 0.3162094642 - - hypothetical protein JCGZ_01613 [Jatropha curcas]
14 Hb_002450_170 0.3207079499 transcription factor TF Family: FAR1 Protein FAR1-RELATED SEQUENCE 5 [Glycine soja]
15 Hb_001523_030 0.3238096678 - - protein binding protein, putative [Ricinus communis]
16 Hb_131872_010 0.3250058587 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
17 Hb_001450_010 0.3255849085 - - PREDICTED: uncharacterized protein LOC105436302 [Cucumis sativus]
18 Hb_097021_010 0.3257512202 - - hypothetical protein POPTR_0075s00200g, partial [Populus trichocarpa]
19 Hb_003636_040 0.3260562856 - - mitochondrial translational initiation factor, putative [Ricinus communis]
20 Hb_001158_010 0.3277892929 - - hypothetical protein, partial [Pseudomonas fluorescens]

Gene co-expression network

sample Hb_123046_010 Hb_123046_010 Hb_131102_010 Hb_131102_010 Hb_123046_010--Hb_131102_010 Hb_133820_010 Hb_133820_010 Hb_123046_010--Hb_133820_010 Hb_003523_040 Hb_003523_040 Hb_123046_010--Hb_003523_040 Hb_154726_010 Hb_154726_010 Hb_123046_010--Hb_154726_010 Hb_159036_010 Hb_159036_010 Hb_123046_010--Hb_159036_010 Hb_170559_010 Hb_170559_010 Hb_123046_010--Hb_170559_010 Hb_131102_010--Hb_133820_010 Hb_131872_010 Hb_131872_010 Hb_131102_010--Hb_131872_010 Hb_019656_010 Hb_019656_010 Hb_131102_010--Hb_019656_010 Hb_043708_010 Hb_043708_010 Hb_131102_010--Hb_043708_010 Hb_001450_010 Hb_001450_010 Hb_131102_010--Hb_001450_010 Hb_004650_060 Hb_004650_060 Hb_131102_010--Hb_004650_060 Hb_122556_010 Hb_122556_010 Hb_133820_010--Hb_122556_010 Hb_000154_010 Hb_000154_010 Hb_133820_010--Hb_000154_010 Hb_006132_030 Hb_006132_030 Hb_133820_010--Hb_006132_030 Hb_011484_010 Hb_011484_010 Hb_133820_010--Hb_011484_010 Hb_086077_020 Hb_086077_020 Hb_133820_010--Hb_086077_020 Hb_003523_040--Hb_122556_010 Hb_003523_040--Hb_043708_010 Hb_094900_010 Hb_094900_010 Hb_003523_040--Hb_094900_010 Hb_003523_040--Hb_133820_010 Hb_003523_040--Hb_159036_010 Hb_154726_010--Hb_001450_010 Hb_003375_050 Hb_003375_050 Hb_154726_010--Hb_003375_050 Hb_041813_050 Hb_041813_050 Hb_154726_010--Hb_041813_050 Hb_017075_020 Hb_017075_020 Hb_154726_010--Hb_017075_020 Hb_057638_010 Hb_057638_010 Hb_154726_010--Hb_057638_010 Hb_100288_010 Hb_100288_010 Hb_154726_010--Hb_100288_010 Hb_159036_010--Hb_122556_010 Hb_016482_010 Hb_016482_010 Hb_159036_010--Hb_016482_010 Hb_159036_010--Hb_094900_010 Hb_159036_010--Hb_133820_010 Hb_012572_020 Hb_012572_020 Hb_159036_010--Hb_012572_020 Hb_003406_030 Hb_003406_030 Hb_170559_010--Hb_003406_030 Hb_171685_020 Hb_171685_020 Hb_170559_010--Hb_171685_020 Hb_013420_040 Hb_013420_040 Hb_170559_010--Hb_013420_040 Hb_003362_020 Hb_003362_020 Hb_170559_010--Hb_003362_020 Hb_170156_010 Hb_170156_010 Hb_170559_010--Hb_170156_010 Hb_002687_070 Hb_002687_070 Hb_170559_010--Hb_002687_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0504152 0.0406243 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0922786 0 0.127953 0.0889287 0.425053

CAGE analysis