Hb_012572_020

Information

Type -
Description -
Location Contig12572: 31313-35098
Sequence    

Annotation

kegg
ID tcc:TCM_009549
description DNA/RNA polymerases superfamily protein
nr
ID XP_009787832.1
description PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
swissprot
ID P0CT40
description Transposon Tf2-9 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-9 PE=3 SV=1
trembl
ID A0A061E6T4
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_009549 PE=4 SV=1
Gene Ontology
ID GO:0003676
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012572_020 0.0 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
2 Hb_016482_010 0.2482591367 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
3 Hb_000103_350 0.2739589653 - - -
4 Hb_159036_010 0.2788239987 - - -
5 Hb_039262_010 0.2887882535 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
6 Hb_011986_010 0.2893934823 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
7 Hb_000853_410 0.2924120499 - - -
8 Hb_001258_030 0.2928571537 - - tRNA-dihydrouridine synthase, putative [Ricinus communis]
9 Hb_000836_530 0.2942175087 - - PREDICTED: uncharacterized protein LOC105634429 [Jatropha curcas]
10 Hb_000976_230 0.2948275271 - - PREDICTED: probable terpene synthase 4 [Jatropha curcas]
11 Hb_011484_010 0.3012966251 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
12 Hb_001114_040 0.3047786268 - - PREDICTED: uncharacterized protein LOC104213140 [Nicotiana sylvestris]
13 Hb_004968_100 0.3055134116 - - PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Elaeis guineensis]
14 Hb_000050_180 0.3105872808 - - -
15 Hb_179022_010 0.3151386581 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
16 Hb_000283_080 0.3152889961 - - -
17 Hb_044187_010 0.3200903543 - - PREDICTED: uncharacterized protein LOC105650390, partial [Jatropha curcas]
18 Hb_001159_120 0.322058075 - - PREDICTED: uncharacterized protein LOC105645945 [Jatropha curcas]
19 Hb_005505_040 0.3223318725 - - -
20 Hb_077935_010 0.3233992194 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]

Gene co-expression network

sample Hb_012572_020 Hb_012572_020 Hb_016482_010 Hb_016482_010 Hb_012572_020--Hb_016482_010 Hb_000103_350 Hb_000103_350 Hb_012572_020--Hb_000103_350 Hb_159036_010 Hb_159036_010 Hb_012572_020--Hb_159036_010 Hb_039262_010 Hb_039262_010 Hb_012572_020--Hb_039262_010 Hb_011986_010 Hb_011986_010 Hb_012572_020--Hb_011986_010 Hb_000853_410 Hb_000853_410 Hb_012572_020--Hb_000853_410 Hb_016482_010--Hb_039262_010 Hb_016482_010--Hb_159036_010 Hb_000032_480 Hb_000032_480 Hb_016482_010--Hb_000032_480 Hb_000906_130 Hb_000906_130 Hb_016482_010--Hb_000906_130 Hb_001617_020 Hb_001617_020 Hb_016482_010--Hb_001617_020 Hb_148392_010 Hb_148392_010 Hb_000103_350--Hb_148392_010 Hb_005194_030 Hb_005194_030 Hb_000103_350--Hb_005194_030 Hb_000331_650 Hb_000331_650 Hb_000103_350--Hb_000331_650 Hb_179022_010 Hb_179022_010 Hb_000103_350--Hb_179022_010 Hb_058722_010 Hb_058722_010 Hb_000103_350--Hb_058722_010 Hb_122556_010 Hb_122556_010 Hb_159036_010--Hb_122556_010 Hb_094900_010 Hb_094900_010 Hb_159036_010--Hb_094900_010 Hb_133820_010 Hb_133820_010 Hb_159036_010--Hb_133820_010 Hb_003523_040 Hb_003523_040 Hb_159036_010--Hb_003523_040 Hb_002888_020 Hb_002888_020 Hb_039262_010--Hb_002888_020 Hb_000976_230 Hb_000976_230 Hb_039262_010--Hb_000976_230 Hb_036311_020 Hb_036311_020 Hb_039262_010--Hb_036311_020 Hb_000399_010 Hb_000399_010 Hb_039262_010--Hb_000399_010 Hb_042202_050 Hb_042202_050 Hb_039262_010--Hb_042202_050 Hb_001114_040 Hb_001114_040 Hb_011986_010--Hb_001114_040 Hb_077935_010 Hb_077935_010 Hb_011986_010--Hb_077935_010 Hb_007054_050 Hb_007054_050 Hb_011986_010--Hb_007054_050 Hb_009150_030 Hb_009150_030 Hb_011986_010--Hb_009150_030 Hb_000122_210 Hb_000122_210 Hb_011986_010--Hb_000122_210 Hb_063405_020 Hb_063405_020 Hb_011986_010--Hb_063405_020 Hb_168905_010 Hb_168905_010 Hb_000853_410--Hb_168905_010 Hb_001159_120 Hb_001159_120 Hb_000853_410--Hb_001159_120 Hb_005000_070 Hb_005000_070 Hb_000853_410--Hb_005000_070 Hb_000210_220 Hb_000210_220 Hb_000853_410--Hb_000210_220 Hb_061802_010 Hb_061802_010 Hb_000853_410--Hb_061802_010 Hb_009113_070 Hb_009113_070 Hb_000853_410--Hb_009113_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00562777 0.0111211 0 0 0.0165305 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0127555 0.0100379 0.0192382 0.00397864 0.0214614

CAGE analysis