Hb_179022_010

Information

Type -
Description -
Location Contig179022: 17-1225
Sequence    

Annotation

kegg
ID tcc:TCM_003164
description hypothetical protein
nr
ID XP_012075160.1
description PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A061DPQ5
description Uncharacterized protein OS=Theobroma cacao GN=TCM_003164 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_179022_010 0.0 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
2 Hb_010710_080 0.1159088136 - - -
3 Hb_001789_210 0.1402932168 - - PREDICTED: methyltransferase-like protein 1 isoform X2 [Jatropha curcas]
4 Hb_001638_270 0.1460656069 - - PREDICTED: vacuolar protein sorting-associated protein 8 homolog isoform X2 [Jatropha curcas]
5 Hb_000732_140 0.1463734915 - - PREDICTED: probable serine/threonine-protein kinase abkC [Jatropha curcas]
6 Hb_004162_090 0.1471690254 transcription factor TF Family: MYB PREDICTED: transcription factor DIVARICATA [Jatropha curcas]
7 Hb_001136_090 0.1522652985 - - Protein PNS1, putative [Ricinus communis]
8 Hb_009382_010 0.1525979162 transcription factor TF Family: G2-like DNA binding protein, putative [Ricinus communis]
9 Hb_002888_030 0.1547722853 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1 [Jatropha curcas]
10 Hb_001258_030 0.154969285 - - tRNA-dihydrouridine synthase, putative [Ricinus communis]
11 Hb_006913_030 0.1553255116 - - PREDICTED: quinone oxidoreductase-like protein 2 homolog [Jatropha curcas]
12 Hb_003158_010 0.1553369754 - - hypothetical protein JCGZ_17361 [Jatropha curcas]
13 Hb_002890_180 0.1555049509 - - PREDICTED: squamous cell carcinoma antigen recognized by T-cells 3 [Jatropha curcas]
14 Hb_003226_180 0.15616531 - - PREDICTED: uncharacterized protein C57A7.06 [Jatropha curcas]
15 Hb_000819_080 0.1568422341 - - Plastid-lipid-associated protein, chloroplast precursor, putative [Ricinus communis]
16 Hb_000920_060 0.156983627 - - PREDICTED: intron-binding protein aquarius [Jatropha curcas]
17 Hb_028900_010 0.1593853264 - - PREDICTED: uncharacterized protein LOC105631404 isoform X2 [Jatropha curcas]
18 Hb_001136_100 0.1603304881 - - hypothetical protein MTR_085s0013 [Medicago truncatula]
19 Hb_002872_020 0.1603381208 - - WD-repeat protein, putative [Ricinus communis]
20 Hb_001268_350 0.1605471823 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105115846 [Populus euphratica]

Gene co-expression network

sample Hb_179022_010 Hb_179022_010 Hb_010710_080 Hb_010710_080 Hb_179022_010--Hb_010710_080 Hb_001789_210 Hb_001789_210 Hb_179022_010--Hb_001789_210 Hb_001638_270 Hb_001638_270 Hb_179022_010--Hb_001638_270 Hb_000732_140 Hb_000732_140 Hb_179022_010--Hb_000732_140 Hb_004162_090 Hb_004162_090 Hb_179022_010--Hb_004162_090 Hb_001136_090 Hb_001136_090 Hb_179022_010--Hb_001136_090 Hb_002909_050 Hb_002909_050 Hb_010710_080--Hb_002909_050 Hb_000041_280 Hb_000041_280 Hb_010710_080--Hb_000041_280 Hb_010710_080--Hb_001136_090 Hb_001623_480 Hb_001623_480 Hb_010710_080--Hb_001623_480 Hb_011512_060 Hb_011512_060 Hb_010710_080--Hb_011512_060 Hb_000574_440 Hb_000574_440 Hb_010710_080--Hb_000574_440 Hb_007364_010 Hb_007364_010 Hb_001789_210--Hb_007364_010 Hb_002798_040 Hb_002798_040 Hb_001789_210--Hb_002798_040 Hb_001638_250 Hb_001638_250 Hb_001789_210--Hb_001638_250 Hb_004934_090 Hb_004934_090 Hb_001789_210--Hb_004934_090 Hb_001736_040 Hb_001736_040 Hb_001789_210--Hb_001736_040 Hb_006649_060 Hb_006649_060 Hb_001789_210--Hb_006649_060 Hb_167498_010 Hb_167498_010 Hb_001638_270--Hb_167498_010 Hb_003158_010 Hb_003158_010 Hb_001638_270--Hb_003158_010 Hb_000395_130 Hb_000395_130 Hb_001638_270--Hb_000395_130 Hb_000003_190 Hb_000003_190 Hb_001638_270--Hb_000003_190 Hb_000092_020 Hb_000092_020 Hb_001638_270--Hb_000092_020 Hb_000574_540 Hb_000574_540 Hb_001638_270--Hb_000574_540 Hb_077562_050 Hb_077562_050 Hb_000732_140--Hb_077562_050 Hb_000567_210 Hb_000567_210 Hb_000732_140--Hb_000567_210 Hb_002301_220 Hb_002301_220 Hb_000732_140--Hb_002301_220 Hb_000453_170 Hb_000453_170 Hb_000732_140--Hb_000453_170 Hb_005188_050 Hb_005188_050 Hb_000732_140--Hb_005188_050 Hb_000085_100 Hb_000085_100 Hb_000732_140--Hb_000085_100 Hb_004162_090--Hb_001638_270 Hb_000035_290 Hb_000035_290 Hb_004162_090--Hb_000035_290 Hb_001205_230 Hb_001205_230 Hb_004162_090--Hb_001205_230 Hb_027346_010 Hb_027346_010 Hb_004162_090--Hb_027346_010 Hb_005699_090 Hb_005699_090 Hb_004162_090--Hb_005699_090 Hb_025194_040 Hb_025194_040 Hb_004162_090--Hb_025194_040 Hb_001136_090--Hb_000041_280 Hb_001136_100 Hb_001136_100 Hb_001136_090--Hb_001136_100 Hb_002367_130 Hb_002367_130 Hb_001136_090--Hb_002367_130 Hb_012132_030 Hb_012132_030 Hb_001136_090--Hb_012132_030 Hb_001502_060 Hb_001502_060 Hb_001136_090--Hb_001502_060 Hb_000072_350 Hb_000072_350 Hb_001136_090--Hb_000072_350
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.1229 0.792985 0.282319 0.11606 1.36802 0.413882
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.75096 0.627577 0.818592 0.741221 0.83429

CAGE analysis