Hb_058722_010

Information

Type -
Description -
Location Contig58722: 13439-14547
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_058722_010 0.0 - - -
2 Hb_068804_040 0.2098998864 - - -
3 Hb_011249_050 0.2591518367 - - -
4 Hb_000103_350 0.2814852788 - - -
5 Hb_080085_010 0.282598773 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
6 Hb_003813_160 0.3278142066 - - -
7 Hb_057098_010 0.3460627653 - - -
8 Hb_163472_010 0.3464625668 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
9 Hb_002014_110 0.3512495117 - - -
10 Hb_001377_250 0.3540331241 - - dynamin, putative [Ricinus communis]
11 Hb_033661_010 0.3566885961 - - PREDICTED: uncharacterized protein LOC105852393, partial [Cicer arietinum]
12 Hb_003938_070 0.3607575637 - - ring finger protein, putative [Ricinus communis]
13 Hb_126380_010 0.3612226485 desease resistance Gene Name: NB-ARC ATP binding protein, putative [Ricinus communis]
14 Hb_005194_030 0.3617437541 - - PREDICTED: putative formamidase C869.04 isoform X1 [Jatropha curcas]
15 Hb_004631_130 0.3623641529 - - helicase domain-containing family protein [Populus trichocarpa]
16 Hb_002546_020 0.3628958273 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD1-1 [Malus domestica]
17 Hb_001172_080 0.3631899004 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
18 Hb_001901_030 0.3664426735 - - -
19 Hb_005657_020 0.3667325875 - - -
20 Hb_000098_290 0.3675214088 - - -

Gene co-expression network

sample Hb_058722_010 Hb_058722_010 Hb_068804_040 Hb_068804_040 Hb_058722_010--Hb_068804_040 Hb_011249_050 Hb_011249_050 Hb_058722_010--Hb_011249_050 Hb_000103_350 Hb_000103_350 Hb_058722_010--Hb_000103_350 Hb_080085_010 Hb_080085_010 Hb_058722_010--Hb_080085_010 Hb_003813_160 Hb_003813_160 Hb_058722_010--Hb_003813_160 Hb_057098_010 Hb_057098_010 Hb_058722_010--Hb_057098_010 Hb_068804_040--Hb_011249_050 Hb_068804_040--Hb_057098_010 Hb_003416_050 Hb_003416_050 Hb_068804_040--Hb_003416_050 Hb_002546_020 Hb_002546_020 Hb_068804_040--Hb_002546_020 Hb_000098_290 Hb_000098_290 Hb_068804_040--Hb_000098_290 Hb_011249_050--Hb_057098_010 Hb_011249_050--Hb_000098_290 Hb_000679_060 Hb_000679_060 Hb_011249_050--Hb_000679_060 Hb_011861_060 Hb_011861_060 Hb_011249_050--Hb_011861_060 Hb_148392_010 Hb_148392_010 Hb_000103_350--Hb_148392_010 Hb_005194_030 Hb_005194_030 Hb_000103_350--Hb_005194_030 Hb_012572_020 Hb_012572_020 Hb_000103_350--Hb_012572_020 Hb_000331_650 Hb_000331_650 Hb_000103_350--Hb_000331_650 Hb_179022_010 Hb_179022_010 Hb_000103_350--Hb_179022_010 Hb_033661_010 Hb_033661_010 Hb_080085_010--Hb_033661_010 Hb_040290_010 Hb_040290_010 Hb_080085_010--Hb_040290_010 Hb_103362_010 Hb_103362_010 Hb_080085_010--Hb_103362_010 Hb_001377_250 Hb_001377_250 Hb_080085_010--Hb_001377_250 Hb_001277_230 Hb_001277_230 Hb_080085_010--Hb_001277_230 Hb_001233_040 Hb_001233_040 Hb_003813_160--Hb_001233_040 Hb_001604_050 Hb_001604_050 Hb_003813_160--Hb_001604_050 Hb_003813_160--Hb_033661_010 Hb_184403_020 Hb_184403_020 Hb_003813_160--Hb_184403_020 Hb_000753_190 Hb_000753_190 Hb_003813_160--Hb_000753_190 Hb_003813_160--Hb_011249_050 Hb_037063_010 Hb_037063_010 Hb_057098_010--Hb_037063_010 Hb_001638_090 Hb_001638_090 Hb_057098_010--Hb_001638_090 Hb_005539_020 Hb_005539_020 Hb_057098_010--Hb_005539_020 Hb_057098_010--Hb_000098_290 Hb_000796_240 Hb_000796_240 Hb_057098_010--Hb_000796_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0471309 0.290364 0 0 0.186659 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.109676 0.172372 0 0.106403 0.165257

CAGE analysis