Hb_003416_050

Information

Type -
Description -
Location Contig3416: 129851-130818
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003416_050 0.0 - - -
2 Hb_001001_100 0.2439989284 - - PREDICTED: uncharacterized protein LOC105650392 [Jatropha curcas]
3 Hb_011030_030 0.2693539527 - - PLC-like phosphodiesterases superfamily protein [Theobroma cacao]
4 Hb_068804_040 0.2698393931 - - -
5 Hb_000032_060 0.2819479634 - - conserved hypothetical protein [Ricinus communis]
6 Hb_002272_040 0.2839749938 - - hypothetical protein POPTR_0013s02610g, partial [Populus trichocarpa]
7 Hb_177132_010 0.2988029825 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
8 Hb_002157_130 0.3045885905 - - -
9 Hb_000710_080 0.3052348779 - - hypothetical protein EUTSA_v10023022mg [Eutrema salsugineum]
10 Hb_000208_030 0.3059817413 - - -
11 Hb_001638_160 0.3085201972 - - PREDICTED: uncharacterized protein LOC105642785 [Jatropha curcas]
12 Hb_002248_030 0.3109860073 - - metallothionein-like protein [Hevea brasiliensis]
13 Hb_001065_070 0.3117313174 - - -
14 Hb_003966_040 0.3137645172 - - PREDICTED: 40S ribosomal protein S9-2 [Jatropha curcas]
15 Hb_000218_010 0.3200033484 - - -
16 Hb_001277_230 0.3217185602 - - -
17 Hb_003041_060 0.322532905 - - -
18 Hb_001047_160 0.3247767157 - - -
19 Hb_000270_330 0.3263796643 - - ribosomal protein S6 kinase, putative [Ricinus communis]
20 Hb_000028_120 0.3295623705 - - Os03g0221800 [Oryza sativa Japonica Group]

Gene co-expression network

sample Hb_003416_050 Hb_003416_050 Hb_001001_100 Hb_001001_100 Hb_003416_050--Hb_001001_100 Hb_011030_030 Hb_011030_030 Hb_003416_050--Hb_011030_030 Hb_068804_040 Hb_068804_040 Hb_003416_050--Hb_068804_040 Hb_000032_060 Hb_000032_060 Hb_003416_050--Hb_000032_060 Hb_002272_040 Hb_002272_040 Hb_003416_050--Hb_002272_040 Hb_177132_010 Hb_177132_010 Hb_003416_050--Hb_177132_010 Hb_001001_100--Hb_002272_040 Hb_007044_100 Hb_007044_100 Hb_001001_100--Hb_007044_100 Hb_011861_060 Hb_011861_060 Hb_001001_100--Hb_011861_060 Hb_143629_140 Hb_143629_140 Hb_001001_100--Hb_143629_140 Hb_002157_130 Hb_002157_130 Hb_001001_100--Hb_002157_130 Hb_000208_030 Hb_000208_030 Hb_011030_030--Hb_000208_030 Hb_089437_010 Hb_089437_010 Hb_011030_030--Hb_089437_010 Hb_005269_030 Hb_005269_030 Hb_011030_030--Hb_005269_030 Hb_027428_030 Hb_027428_030 Hb_011030_030--Hb_027428_030 Hb_000482_060 Hb_000482_060 Hb_011030_030--Hb_000482_060 Hb_011249_050 Hb_011249_050 Hb_068804_040--Hb_011249_050 Hb_058722_010 Hb_058722_010 Hb_068804_040--Hb_058722_010 Hb_057098_010 Hb_057098_010 Hb_068804_040--Hb_057098_010 Hb_002546_020 Hb_002546_020 Hb_068804_040--Hb_002546_020 Hb_000098_290 Hb_000098_290 Hb_068804_040--Hb_000098_290 Hb_006788_160 Hb_006788_160 Hb_000032_060--Hb_006788_160 Hb_000218_010 Hb_000218_010 Hb_000032_060--Hb_000218_010 Hb_010642_030 Hb_010642_030 Hb_000032_060--Hb_010642_030 Hb_003849_250 Hb_003849_250 Hb_000032_060--Hb_003849_250 Hb_000753_200 Hb_000753_200 Hb_000032_060--Hb_000753_200 Hb_000866_470 Hb_000866_470 Hb_000032_060--Hb_000866_470 Hb_011639_080 Hb_011639_080 Hb_002272_040--Hb_011639_080 Hb_000243_090 Hb_000243_090 Hb_002272_040--Hb_000243_090 Hb_000028_120 Hb_000028_120 Hb_002272_040--Hb_000028_120 Hb_000613_040 Hb_000613_040 Hb_002272_040--Hb_000613_040 Hb_177132_010--Hb_000032_060 Hb_001277_230 Hb_001277_230 Hb_177132_010--Hb_001277_230 Hb_177132_010--Hb_010642_030 Hb_001741_120 Hb_001741_120 Hb_177132_010--Hb_001741_120 Hb_008489_020 Hb_008489_020 Hb_177132_010--Hb_008489_020 Hb_002151_080 Hb_002151_080 Hb_177132_010--Hb_002151_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.559345 0.280834 0 0.545032 0.463147
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.526063 0.413446 0 0.18353 0.344659

CAGE analysis